Date: Wed, 24 Jun 2026 19:54:35 +0000 From: Joseph Mingrone <jrm@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: afbbd8052589 - main - biology/diamond: Update to 2.2.2 Message-ID: <6a3c35fb.43de4.745b1fba@gitrepo.freebsd.org>
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The branch main has been updated by jrm: URL: https://cgit.FreeBSD.org/ports/commit/?id=afbbd8052589618912a1df8076f69fe7af1d2e3a commit afbbd8052589618912a1df8076f69fe7af1d2e3a Author: Joseph Mingrone <jrm@FreeBSD.org> AuthorDate: 2026-06-23 13:09:29 +0000 Commit: Joseph Mingrone <jrm@FreeBSD.org> CommitDate: 2026-06-24 18:46:33 +0000 biology/diamond: Update to 2.2.2 Release notes: https://github.com/bbuchfink/diamond/releases/tag/v2.2.2 Event: Halifax Hackathon 202606 Sponsored by: The FreeBSD Foundation --- biology/diamond/Makefile | 2 +- biology/diamond/distinfo | 6 +++--- biology/diamond/files/patch-src_util_io_decompressor.h | 18 ++++++++++++++++++ 3 files changed, 22 insertions(+), 4 deletions(-) diff --git a/biology/diamond/Makefile b/biology/diamond/Makefile index 690d48df2128..244ed8c79bdf 100644 --- a/biology/diamond/Makefile +++ b/biology/diamond/Makefile @@ -1,6 +1,6 @@ PORTNAME= diamond DISTVERSIONPREFIX= v -DISTVERSION= 2.2.1 +DISTVERSION= 2.2.2 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org diff --git a/biology/diamond/distinfo b/biology/diamond/distinfo index 88f9ea0b2cfe..b6253b1ba42d 100644 --- a/biology/diamond/distinfo +++ b/biology/diamond/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1782159924 -SHA256 (bbuchfink-diamond-v2.2.1_GH0.tar.gz) = 36a70540039c50e4afa1d36587eb80d1a85113288c2a49731cdaaf90e3de7d02 -SIZE (bbuchfink-diamond-v2.2.1_GH0.tar.gz) = 9358746 +TIMESTAMP = 1782163658 +SHA256 (bbuchfink-diamond-v2.2.2_GH0.tar.gz) = 35cb389dad7326515267b21a04256382853754d32b48eae6fd8a56fbb191e1c6 +SIZE (bbuchfink-diamond-v2.2.2_GH0.tar.gz) = 14394953 diff --git a/biology/diamond/files/patch-src_util_io_decompressor.h b/biology/diamond/files/patch-src_util_io_decompressor.h new file mode 100644 index 000000000000..7f83d7ea0f6b --- /dev/null +++ b/biology/diamond/files/patch-src_util_io_decompressor.h @@ -0,0 +1,18 @@ +--- src/util/io/decompressor.h.orig 2026-06-22 21:46:21 UTC ++++ src/util/io/decompressor.h +@@ -79,7 +79,7 @@ struct PassThrough : Decompressor { + return std::fread(buffer, size, count, stream); + } + int fgetc(FILE* stream) override { +-#if defined(_MSC_VER) || defined(__APPLE__) ++#if defined(_MSC_VER) || defined(__APPLE__) || defined(__FreeBSD__) + return std::fgetc(stream); + #else + return fgetc_unlocked(stream); +@@ -141,4 +142,4 @@ struct ZstdDecompressor : Decompressor { (private) + bool eos_ = false; + int pushback_ = EOF; + }; +-#endif +\ No newline at end of file ++#endifhome | help
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