Date: Wed, 30 May 2007 12:48:28 -0300 From: "Jackson Lima" <jacksonlima@gmail.com> To: freebsd-java@freebsd.org Subject: java.lang.OutofMemoryError: Java heap space Message-ID: <dc2b54950705300848q67fb5237t681f7e1a228d1b0f@mail.gmail.com>
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Hi to all!
I am trying to run the TreeAnnotator program, that sumariza the
phylogenetics trees generated by the BEAST. The two programs run in
java, try to run the program and it it gives this message of error:
"java.lang.OutofMemoryError: Java heap space"
The code standard of the TreeAnnotator is:
#!/bin/sh
if [ -z "$BEAST" ]; then
LS_OUT=$(ls -l "$0")' -> '"$0"
FILENAME0=${LS_OUT#*-> }
FILENAME=${FILENAME0% -> *}
BEAST=`dirname "$FILENAME"`/..
fi
BEAST_LIB=$BEAST/lib
java -Xms64m -Xmx256m -Djava.library.path=$BEAST_LIB -cp
$BEAST_LIB/beast.jar dr.app.tools.TreeAnnotator $*
In the page of the program
(http://beast.bio.ed.ac.uk/Increasing_Memory_Usage) the author
suggests to modify the code of the TreeAnnotator, the parameters -
Xmx and - Xms, I tried - Xms1024m - Xmx1024m but I did not obtain
success when run the program, therefore this message of error:
"Error occurred during initialization of VM
Could not reserve enough space for object heap
Could not create the Java virtual machine.
Exit 1
"
But my limits are:
cputime unlimited
filesize unlimited
datasize 2097152 kbytes
stacksize 2097152 kbytes
coredumpsize unlimited
memoryuse unlimited
vmemoryuse unlimited
descriptors 11095
memorylocked unlimited
maxproc 5547
sbsize unlimited
The CPU:
FreeBSD 6.2-RELEASE-p3 FreeBSD 6.2-RELEASE-p3 #1: Thu Apr 26 13:14:47 UTC 2007
/usr/obj/usr/src/sys/GENERIC i386
Have 4 Gb of Memory.
Thanks.
Jackson Lima
Ps: Sorry my poor english.
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