Date: Sun, 24 Jul 2016 20:39:44 +0000 (UTC) From: Xin LI <delphij@FreeBSD.org> To: src-committers@freebsd.org, svn-src-all@freebsd.org, svn-src-vendor@freebsd.org Subject: svn commit: r303275 - in vendor/libdivsufsort: . dist dist/CMakeModules dist/examples dist/include dist/lib dist/pkgconfig Message-ID: <201607242039.u6OKdi9I048958@repo.freebsd.org>
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Author: delphij Date: Sun Jul 24 20:39:43 2016 New Revision: 303275 URL: https://svnweb.freebsd.org/changeset/base/303275 Log: Vendor import of libdivsufsort, a software library that implements a lightweight suffix array construction algorithm. Obtained from: https://github.com/y-256/libdivsufsort Added: vendor/libdivsufsort/ vendor/libdivsufsort/dist/ vendor/libdivsufsort/dist/.gitignore vendor/libdivsufsort/dist/CHANGELOG.md vendor/libdivsufsort/dist/CMakeLists.txt (contents, props changed) vendor/libdivsufsort/dist/CMakeModules/ vendor/libdivsufsort/dist/CMakeModules/AppendCompilerFlags.cmake vendor/libdivsufsort/dist/CMakeModules/CheckFunctionKeywords.cmake vendor/libdivsufsort/dist/CMakeModules/CheckLFS.cmake vendor/libdivsufsort/dist/CMakeModules/ProjectCPack.cmake vendor/libdivsufsort/dist/CMakeModules/cmake_uninstall.cmake.in (contents, props changed) vendor/libdivsufsort/dist/LICENSE vendor/libdivsufsort/dist/README.md vendor/libdivsufsort/dist/VERSION.cmake vendor/libdivsufsort/dist/examples/ vendor/libdivsufsort/dist/examples/CMakeLists.txt (contents, props changed) vendor/libdivsufsort/dist/examples/bwt.c (contents, props changed) vendor/libdivsufsort/dist/examples/mksary.c (contents, props changed) vendor/libdivsufsort/dist/examples/sasearch.c (contents, props changed) vendor/libdivsufsort/dist/examples/suftest.c (contents, props changed) vendor/libdivsufsort/dist/examples/unbwt.c (contents, props changed) vendor/libdivsufsort/dist/include/ vendor/libdivsufsort/dist/include/CMakeLists.txt (contents, props changed) vendor/libdivsufsort/dist/include/config.h.cmake vendor/libdivsufsort/dist/include/divsufsort.h.cmake vendor/libdivsufsort/dist/include/divsufsort_private.h (contents, props changed) vendor/libdivsufsort/dist/include/lfs.h.cmake vendor/libdivsufsort/dist/lib/ vendor/libdivsufsort/dist/lib/CMakeLists.txt (contents, props changed) vendor/libdivsufsort/dist/lib/divsufsort.c (contents, props changed) vendor/libdivsufsort/dist/lib/sssort.c (contents, props changed) vendor/libdivsufsort/dist/lib/trsort.c (contents, props changed) vendor/libdivsufsort/dist/lib/utils.c (contents, props changed) vendor/libdivsufsort/dist/pkgconfig/ vendor/libdivsufsort/dist/pkgconfig/CMakeLists.txt (contents, props changed) vendor/libdivsufsort/dist/pkgconfig/libdivsufsort.pc.cmake Added: vendor/libdivsufsort/dist/.gitignore ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ vendor/libdivsufsort/dist/.gitignore Sun Jul 24 20:39:43 2016 (r303275) @@ -0,0 +1,32 @@ +# Object files +*.o +*.ko +*.obj +*.elf + +# Precompiled Headers +*.gch +*.pch + +# Libraries +*.lib +*.a +*.la +*.lo + +# Shared objects (inc. Windows DLLs) +*.dll +*.so +*.so.* +*.dylib + +# Executables +*.exe +*.out +*.app +*.i*86 +*.x86_64 +*.hex + +# CMake files/directories +build/ Added: vendor/libdivsufsort/dist/CHANGELOG.md ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ vendor/libdivsufsort/dist/CHANGELOG.md Sun Jul 24 20:39:43 2016 (r303275) @@ -0,0 +1,21 @@ +# libdivsufsort Change Log + +See full changelog at: https://github.com/y-256/libdivsufsort/commits + +## [2.0.1] - 2010-11-11 +### Fixed +* Wrong variable used in `divbwt` function +* Enclose some string variables with double quotation marks in include/CMakeLists.txt +* Fix typo in include/CMakeLists.txt + +## 2.0.0 - 2008-08-23 +### Changed +* Switch the build system to [CMake](http://www.cmake.org/) +* Improve the performance of the suffix-sorting algorithm + +### Added +* OpenMP support +* 64-bit version of divsufsort + +[Unreleased]: https://github.com/y-256/libdivsufsort/compare/2.0.1...HEAD +[2.0.1]: https://github.com/y-256/libdivsufsort/compare/2.0.0...2.0.1 Added: vendor/libdivsufsort/dist/CMakeLists.txt ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ vendor/libdivsufsort/dist/CMakeLists.txt Sun Jul 24 20:39:43 2016 (r303275) @@ -0,0 +1,99 @@ +### cmake file for building libdivsufsort Package ### +cmake_minimum_required(VERSION 2.4.4) +set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/CMakeModules") +include(AppendCompilerFlags) + +## Project information ## +project(libdivsufsort C) +set(PROJECT_VENDOR "Yuta Mori") +set(PROJECT_CONTACT "yuta.256@gmail.com") +set(PROJECT_URL "https://github.com/y-256/libdivsufsort") +set(PROJECT_DESCRIPTION "A lightweight suffix sorting library") +include(VERSION.cmake) + +## CPack configuration ## +set(CPACK_GENERATOR "TGZ;TBZ2;ZIP") +set(CPACK_SOURCE_GENERATOR "TGZ;TBZ2;ZIP") +include(ProjectCPack) + +## Project options ## +option(BUILD_SHARED_LIBS "Set to OFF to build static libraries" ON) +option(BUILD_EXAMPLES "Build examples" ON) +option(BUILD_DIVSUFSORT64 "Build libdivsufsort64" OFF) +option(USE_OPENMP "Use OpenMP for parallelization" OFF) +option(WITH_LFS "Enable Large File Support" ON) + +## Installation directories ## +set(LIB_SUFFIX "" CACHE STRING "Define suffix of directory name (32 or 64)") + +set(CMAKE_INSTALL_RUNTIMEDIR "" CACHE PATH "Specify the output directory for dll runtimes (default is bin)") +if(NOT CMAKE_INSTALL_RUNTIMEDIR) + set(CMAKE_INSTALL_RUNTIMEDIR "${CMAKE_INSTALL_PREFIX}/bin") +endif(NOT CMAKE_INSTALL_RUNTIMEDIR) + +set(CMAKE_INSTALL_LIBDIR "" CACHE PATH "Specify the output directory for libraries (default is lib)") +if(NOT CMAKE_INSTALL_LIBDIR) + set(CMAKE_INSTALL_LIBDIR "${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}") +endif(NOT CMAKE_INSTALL_LIBDIR) + +set(CMAKE_INSTALL_INCLUDEDIR "" CACHE PATH "Specify the output directory for header files (default is include)") +if(NOT CMAKE_INSTALL_INCLUDEDIR) + set(CMAKE_INSTALL_INCLUDEDIR "${CMAKE_INSTALL_PREFIX}/include") +endif(NOT CMAKE_INSTALL_INCLUDEDIR) + +set(CMAKE_INSTALL_PKGCONFIGDIR "" CACHE PATH "Specify the output directory for pkgconfig files (default is lib/pkgconfig)") +if(NOT CMAKE_INSTALL_PKGCONFIGDIR) + set(CMAKE_INSTALL_PKGCONFIGDIR "${CMAKE_INSTALL_LIBDIR}/pkgconfig") +endif(NOT CMAKE_INSTALL_PKGCONFIGDIR) + +## Build type ## +if(NOT CMAKE_BUILD_TYPE) + set(CMAKE_BUILD_TYPE "Release") +elseif(CMAKE_BUILD_TYPE STREQUAL "Debug") + set(CMAKE_VERBOSE_MAKEFILE ON) +endif(NOT CMAKE_BUILD_TYPE) + +## Compiler options ## +if(MSVC) + append_c_compiler_flags("/W4" "VC" CMAKE_C_FLAGS) + append_c_compiler_flags("/Oi;/Ot;/Ox;/Oy" "VC" CMAKE_C_FLAGS_RELEASE) + if(USE_OPENMP) + append_c_compiler_flags("/openmp" "VC" CMAKE_C_FLAGS) + endif(USE_OPENMP) +elseif(BORLAND) + append_c_compiler_flags("-w" "BCC" CMAKE_C_FLAGS) + append_c_compiler_flags("-Oi;-Og;-Os;-Ov;-Ox" "BCC" CMAKE_C_FLAGS_RELEASE) +else(MSVC) + if(CMAKE_COMPILER_IS_GNUCC) + append_c_compiler_flags("-Wall" "GCC" CMAKE_C_FLAGS) + append_c_compiler_flags("-fomit-frame-pointer" "GCC" CMAKE_C_FLAGS_RELEASE) + if(USE_OPENMP) + append_c_compiler_flags("-fopenmp" "GCC" CMAKE_C_FLAGS) + endif(USE_OPENMP) + else(CMAKE_COMPILER_IS_GNUCC) + append_c_compiler_flags("-Wall" "UNKNOWN" CMAKE_C_FLAGS) + append_c_compiler_flags("-fomit-frame-pointer" "UNKNOWN" CMAKE_C_FLAGS_RELEASE) + if(USE_OPENMP) + append_c_compiler_flags("-fopenmp;-openmp;-omp" "UNKNOWN" CMAKE_C_FLAGS) + endif(USE_OPENMP) + endif(CMAKE_COMPILER_IS_GNUCC) +endif(MSVC) + +## Add definitions ## +add_definitions(-DHAVE_CONFIG_H=1 -D__STDC_LIMIT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS) + +## Add subdirectories ## +add_subdirectory(pkgconfig) +add_subdirectory(include) +add_subdirectory(lib) +if(BUILD_EXAMPLES) + add_subdirectory(examples) +endif(BUILD_EXAMPLES) + +## Add 'uninstall' target ## +CONFIGURE_FILE( + "${CMAKE_CURRENT_SOURCE_DIR}/CMakeModules/cmake_uninstall.cmake.in" + "${CMAKE_CURRENT_BINARY_DIR}/CMakeModules/cmake_uninstall.cmake" + IMMEDIATE @ONLY) +ADD_CUSTOM_TARGET(uninstall + "${CMAKE_COMMAND}" -P "${CMAKE_CURRENT_BINARY_DIR}/CMakeModules/cmake_uninstall.cmake") Added: vendor/libdivsufsort/dist/CMakeModules/AppendCompilerFlags.cmake ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ vendor/libdivsufsort/dist/CMakeModules/AppendCompilerFlags.cmake Sun Jul 24 20:39:43 2016 (r303275) @@ -0,0 +1,38 @@ +include(CheckCSourceCompiles) +include(CheckCXXSourceCompiles) + +macro(append_c_compiler_flags _flags _name _result) + set(SAFE_CMAKE_REQUIRED_FLAGS ${CMAKE_REQUIRED_FLAGS}) + string(REGEX REPLACE "[-+/ ]" "_" cname "${_name}") + string(TOUPPER "${cname}" cname) + foreach(flag ${_flags}) + string(REGEX REPLACE "^[-+/ ]+(.*)[-+/ ]*$" "\\1" flagname "${flag}") + string(REGEX REPLACE "[-+/ ]" "_" flagname "${flagname}") + string(TOUPPER "${flagname}" flagname) + set(have_flag "HAVE_${cname}_${flagname}") + set(CMAKE_REQUIRED_FLAGS "${flag}") + check_c_source_compiles("int main() { return 0; }" ${have_flag}) + if(${have_flag}) + set(${_result} "${${_result}} ${flag}") + endif(${have_flag}) + endforeach(flag) + set(CMAKE_REQUIRED_FLAGS ${SAFE_CMAKE_REQUIRED_FLAGS}) +endmacro(append_c_compiler_flags) + +macro(append_cxx_compiler_flags _flags _name _result) + set(SAFE_CMAKE_REQUIRED_FLAGS ${CMAKE_REQUIRED_FLAGS}) + string(REGEX REPLACE "[-+/ ]" "_" cname "${_name}") + string(TOUPPER "${cname}" cname) + foreach(flag ${_flags}) + string(REGEX REPLACE "^[-+/ ]+(.*)[-+/ ]*$" "\\1" flagname "${flag}") + string(REGEX REPLACE "[-+/ ]" "_" flagname "${flagname}") + string(TOUPPER "${flagname}" flagname) + set(have_flag "HAVE_${cname}_${flagname}") + set(CMAKE_REQUIRED_FLAGS "${flag}") + check_cxx_source_compiles("int main() { return 0; }" ${have_flag}) + if(${have_flag}) + set(${_result} "${${_result}} ${flag}") + endif(${have_flag}) + endforeach(flag) + set(CMAKE_REQUIRED_FLAGS ${SAFE_CMAKE_REQUIRED_FLAGS}) +endmacro(append_cxx_compiler_flags) Added: vendor/libdivsufsort/dist/CMakeModules/CheckFunctionKeywords.cmake ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ vendor/libdivsufsort/dist/CMakeModules/CheckFunctionKeywords.cmake Sun Jul 24 20:39:43 2016 (r303275) @@ -0,0 +1,15 @@ +include(CheckCSourceCompiles) + +macro(check_function_keywords _wordlist) + set(${_result} "") + foreach(flag ${_wordlist}) + string(REGEX REPLACE "[-+/ ()]" "_" flagname "${flag}") + string(TOUPPER "${flagname}" flagname) + set(have_flag "HAVE_${flagname}") + check_c_source_compiles("${flag} void func(); void func() { } int main() { func(); return 0; }" ${have_flag}) + if(${have_flag} AND NOT ${_result}) + set(${_result} "${flag}") +# break() + endif(${have_flag} AND NOT ${_result}) + endforeach(flag) +endmacro(check_function_keywords) Added: vendor/libdivsufsort/dist/CMakeModules/CheckLFS.cmake ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ vendor/libdivsufsort/dist/CMakeModules/CheckLFS.cmake Sun Jul 24 20:39:43 2016 (r303275) @@ -0,0 +1,109 @@ +## Checks for large file support ## +include(CheckIncludeFile) +include(CheckSymbolExists) +include(CheckTypeSize) + +macro(check_lfs _isenable) + set(LFS_OFF_T "") + set(LFS_FOPEN "") + set(LFS_FSEEK "") + set(LFS_FTELL "") + set(LFS_PRID "") + + if(${_isenable}) + set(SAFE_CMAKE_REQUIRED_DEFINITIONS "${CMAKE_REQUIRED_DEFINITIONS}") + set(CMAKE_REQUIRED_DEFINITIONS ${CMAKE_REQUIRED_DEFINITIONS} + -D_LARGEFILE_SOURCE -D_LARGE_FILES -D_FILE_OFFSET_BITS=64 + -D__STDC_LIMIT_MACROS -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS) + + check_include_file("sys/types.h" HAVE_SYS_TYPES_H) + check_include_file("inttypes.h" HAVE_INTTYPES_H) + check_include_file("stddef.h" HAVE_STDDEF_H) + check_include_file("stdint.h" HAVE_STDINT_H) + + # LFS type1: 8 <= sizeof(off_t), fseeko, ftello + check_type_size("off_t" SIZEOF_OFF_T) + if(SIZEOF_OFF_T GREATER 7) + check_symbol_exists("fseeko" "stdio.h" HAVE_FSEEKO) + check_symbol_exists("ftello" "stdio.h" HAVE_FTELLO) + if(HAVE_FSEEKO AND HAVE_FTELLO) + set(LFS_OFF_T "off_t") + set(LFS_FOPEN "fopen") + set(LFS_FSEEK "fseeko") + set(LFS_FTELL "ftello") + check_symbol_exists("PRIdMAX" "inttypes.h" HAVE_PRIDMAX) + if(HAVE_PRIDMAX) + set(LFS_PRID "PRIdMAX") + else(HAVE_PRIDMAX) + check_type_size("long" SIZEOF_LONG) + check_type_size("int" SIZEOF_INT) + if(SIZEOF_OFF_T GREATER SIZEOF_LONG) + set(LFS_PRID "\"lld\"") + elseif(SIZEOF_LONG GREATER SIZEOF_INT) + set(LFS_PRID "\"ld\"") + else(SIZEOF_OFF_T GREATER SIZEOF_LONG) + set(LFS_PRID "\"d\"") + endif(SIZEOF_OFF_T GREATER SIZEOF_LONG) + endif(HAVE_PRIDMAX) + endif(HAVE_FSEEKO AND HAVE_FTELLO) + endif(SIZEOF_OFF_T GREATER 7) + + # LFS type2: 8 <= sizeof(off64_t), fopen64, fseeko64, ftello64 + if(NOT LFS_OFF_T) + check_type_size("off64_t" SIZEOF_OFF64_T) + if(SIZEOF_OFF64_T GREATER 7) + check_symbol_exists("fopen64" "stdio.h" HAVE_FOPEN64) + check_symbol_exists("fseeko64" "stdio.h" HAVE_FSEEKO64) + check_symbol_exists("ftello64" "stdio.h" HAVE_FTELLO64) + if(HAVE_FOPEN64 AND HAVE_FSEEKO64 AND HAVE_FTELLO64) + set(LFS_OFF_T "off64_t") + set(LFS_FOPEN "fopen64") + set(LFS_FSEEK "fseeko64") + set(LFS_FTELL "ftello64") + check_symbol_exists("PRIdMAX" "inttypes.h" HAVE_PRIDMAX) + if(HAVE_PRIDMAX) + set(LFS_PRID "PRIdMAX") + else(HAVE_PRIDMAX) + check_type_size("long" SIZEOF_LONG) + check_type_size("int" SIZEOF_INT) + if(SIZEOF_OFF64_T GREATER SIZEOF_LONG) + set(LFS_PRID "\"lld\"") + elseif(SIZEOF_LONG GREATER SIZEOF_INT) + set(LFS_PRID "\"ld\"") + else(SIZEOF_OFF64_T GREATER SIZEOF_LONG) + set(LFS_PRID "\"d\"") + endif(SIZEOF_OFF64_T GREATER SIZEOF_LONG) + endif(HAVE_PRIDMAX) + endif(HAVE_FOPEN64 AND HAVE_FSEEKO64 AND HAVE_FTELLO64) + endif(SIZEOF_OFF64_T GREATER 7) + endif(NOT LFS_OFF_T) + + # LFS type3: 8 <= sizeof(__int64), _fseeki64, _ftelli64 + if(NOT LFS_OFF_T) + check_type_size("__int64" SIZEOF___INT64) + if(SIZEOF___INT64 GREATER 7) + check_symbol_exists("_fseeki64" "stdio.h" HAVE__FSEEKI64) + check_symbol_exists("_ftelli64" "stdio.h" HAVE__FTELLI64) + if(HAVE__FSEEKI64 AND HAVE__FTELLI64) + set(LFS_OFF_T "__int64") + set(LFS_FOPEN "fopen") + set(LFS_FSEEK "_fseeki64") + set(LFS_FTELL "_ftelli64") + set(LFS_PRID "\"I64d\"") + endif(HAVE__FSEEKI64 AND HAVE__FTELLI64) + endif(SIZEOF___INT64 GREATER 7) + endif(NOT LFS_OFF_T) + + set(CMAKE_REQUIRED_DEFINITIONS "${SAFE_CMAKE_REQUIRED_DEFINITIONS}") + endif(${_isenable}) + + if(NOT LFS_OFF_T) + ## not found + set(LFS_OFF_T "long") + set(LFS_FOPEN "fopen") + set(LFS_FSEEK "fseek") + set(LFS_FTELL "ftell") + set(LFS_PRID "\"ld\"") + endif(NOT LFS_OFF_T) + +endmacro(check_lfs) Added: vendor/libdivsufsort/dist/CMakeModules/ProjectCPack.cmake ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ vendor/libdivsufsort/dist/CMakeModules/ProjectCPack.cmake Sun Jul 24 20:39:43 2016 (r303275) @@ -0,0 +1,38 @@ +# If the cmake version includes cpack, use it +IF(EXISTS "${CMAKE_ROOT}/Modules/CPack.cmake") + SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "${PROJECT_DESCRIPTION}") + SET(CPACK_PACKAGE_VENDOR "${PROJECT_VENDOR}") + SET(CPACK_PACKAGE_DESCRIPTION_FILE "${CMAKE_CURRENT_SOURCE_DIR}/README.md") + SET(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/LICENSE") + SET(CPACK_PACKAGE_VERSION_MAJOR "${PROJECT_VERSION_MAJOR}") + SET(CPACK_PACKAGE_VERSION_MINOR "${PROJECT_VERSION_MINOR}") + SET(CPACK_PACKAGE_VERSION_PATCH "${PROJECT_VERSION_PATCH}") +# SET(CPACK_PACKAGE_INSTALL_DIRECTORY "${PROJECT_NAME} ${PROJECT_VERSION}") + SET(CPACK_SOURCE_PACKAGE_FILE_NAME "${PROJECT_NAME}-${PROJECT_VERSION_FULL}") + + IF(NOT DEFINED CPACK_SYSTEM_NAME) + SET(CPACK_SYSTEM_NAME "${CMAKE_SYSTEM_NAME}-${CMAKE_SYSTEM_PROCESSOR}") + ENDIF(NOT DEFINED CPACK_SYSTEM_NAME) + + IF(${CPACK_SYSTEM_NAME} MATCHES Windows) + IF(CMAKE_CL_64) + SET(CPACK_SYSTEM_NAME win64-${CMAKE_SYSTEM_PROCESSOR}) + ELSE(CMAKE_CL_64) + SET(CPACK_SYSTEM_NAME win32-${CMAKE_SYSTEM_PROCESSOR}) + ENDIF(CMAKE_CL_64) + ENDIF(${CPACK_SYSTEM_NAME} MATCHES Windows) + + IF(NOT DEFINED CPACK_PACKAGE_FILE_NAME) + SET(CPACK_PACKAGE_FILE_NAME "${CPACK_SOURCE_PACKAGE_FILE_NAME}-${CPACK_SYSTEM_NAME}") + ENDIF(NOT DEFINED CPACK_PACKAGE_FILE_NAME) + + SET(CPACK_PACKAGE_CONTACT "${PROJECT_CONTACT}") + IF(UNIX) + SET(CPACK_STRIP_FILES "") + SET(CPACK_SOURCE_STRIP_FILES "") +# SET(CPACK_PACKAGE_EXECUTABLES "ccmake" "CMake") + ENDIF(UNIX) + SET(CPACK_SOURCE_IGNORE_FILES "/CVS/" "/build/" "/\\\\.build/" "/\\\\.svn/" "~$") + # include CPack model once all variables are set + INCLUDE(CPack) +ENDIF(EXISTS "${CMAKE_ROOT}/Modules/CPack.cmake") Added: vendor/libdivsufsort/dist/CMakeModules/cmake_uninstall.cmake.in ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ vendor/libdivsufsort/dist/CMakeModules/cmake_uninstall.cmake.in Sun Jul 24 20:39:43 2016 (r303275) @@ -0,0 +1,36 @@ +IF(NOT EXISTS "@CMAKE_CURRENT_BINARY_DIR@/install_manifest.txt") + MESSAGE(FATAL_ERROR "Cannot find install manifest: \"@CMAKE_CURRENT_BINARY_DIR@/install_manifest.txt\"") +ENDIF(NOT EXISTS "@CMAKE_CURRENT_BINARY_DIR@/install_manifest.txt") + +FILE(READ "@CMAKE_CURRENT_BINARY_DIR@/install_manifest.txt" files) +STRING(REGEX REPLACE "\n" ";" files "${files}") + +SET(NUM 0) +FOREACH(file ${files}) + IF(EXISTS "$ENV{DESTDIR}${file}") + MESSAGE(STATUS "Looking for \"$ENV{DESTDIR}${file}\" - found") + SET(UNINSTALL_CHECK_${NUM} 1) + ELSE(EXISTS "$ENV{DESTDIR}${file}") + MESSAGE(STATUS "Looking for \"$ENV{DESTDIR}${file}\" - not found") + SET(UNINSTALL_CHECK_${NUM} 0) + ENDIF(EXISTS "$ENV{DESTDIR}${file}") + MATH(EXPR NUM "1 + ${NUM}") +ENDFOREACH(file) + +SET(NUM 0) +FOREACH(file ${files}) + IF(${UNINSTALL_CHECK_${NUM}}) + MESSAGE(STATUS "Uninstalling \"$ENV{DESTDIR}${file}\"") + EXEC_PROGRAM( + "@CMAKE_COMMAND@" ARGS "-E remove \"$ENV{DESTDIR}${file}\"" + OUTPUT_VARIABLE rm_out + RETURN_VALUE rm_retval + ) + IF(NOT "${rm_retval}" STREQUAL 0) + MESSAGE(FATAL_ERROR "Problem when removing \"$ENV{DESTDIR}${file}\"") + ENDIF(NOT "${rm_retval}" STREQUAL 0) + ENDIF(${UNINSTALL_CHECK_${NUM}}) + MATH(EXPR NUM "1 + ${NUM}") +ENDFOREACH(file) + +FILE(REMOVE "@CMAKE_CURRENT_BINARY_DIR@/install_manifest.txt") Added: vendor/libdivsufsort/dist/LICENSE ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ vendor/libdivsufsort/dist/LICENSE Sun Jul 24 20:39:43 2016 (r303275) @@ -0,0 +1,21 @@ +The MIT License (MIT) + +Copyright (c) 2003 Yuta Mori All rights reserved. + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. Added: vendor/libdivsufsort/dist/README.md ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ vendor/libdivsufsort/dist/README.md Sun Jul 24 20:39:43 2016 (r303275) @@ -0,0 +1,140 @@ +# libdivsufsort + +libdivsufsort is a software library that implements a lightweight suffix array construction algorithm. + +## News +* 2015-03-21: The project has moved from [Google Code](http://code.google.com/p/libdivsufsort/) to [GitHub](https://github.com/y-256/libdivsufsort) + +## Introduction +This library provides a simple and an efficient C API to construct a suffix array and a Burrows-Wheeler transformed string from a given string over a constant-size alphabet. +The algorithm runs in O(n log n) worst-case time using only 5n+O(1) bytes of memory space, where n is the length of +the string. + +## Build requirements +* An ANSI C Compiler (e.g. GNU GCC) +* [CMake](http://www.cmake.org/ "CMake") version 2.4.2 or newer +* CMake-supported build tool + +## Building on GNU/Linux +1. Get the source code from GitHub. You can either + * use git to clone the repository + ``` + git clone https://github.com/y-256/libdivsufsort.git + ``` + * or download a [zip file](../../archive/master.zip) directly +2. Create a `build` directory in the package source directory. +```shell +$ cd libdivsufsort +$ mkdir build +$ cd build +``` +3. Configure the package for your system. +If you want to install to a different location, change the -DCMAKE_INSTALL_PREFIX option. +```shell +$ cmake -DCMAKE_BUILD_TYPE="Release" \ +-DCMAKE_INSTALL_PREFIX="/usr/local" .. +``` +4. Compile the package. +```shell +$ make +``` +5. (Optional) Install the library and header files. +```shell +$ sudo make install +``` + +## API +```c +/* Data types */ +typedef int32_t saint_t; +typedef int32_t saidx_t; +typedef uint8_t sauchar_t; + +/* + * Constructs the suffix array of a given string. + * @param T[0..n-1] The input string. + * @param SA[0..n-1] The output array or suffixes. + * @param n The length of the given string. + * @return 0 if no error occurred, -1 or -2 otherwise. + */ +saint_t +divsufsort(const sauchar_t *T, saidx_t *SA, saidx_t n); + +/* + * Constructs the burrows-wheeler transformed string of a given string. + * @param T[0..n-1] The input string. + * @param U[0..n-1] The output string. (can be T) + * @param A[0..n-1] The temporary array. (can be NULL) + * @param n The length of the given string. + * @return The primary index if no error occurred, -1 or -2 otherwise. + */ +saidx_t +divbwt(const sauchar_t *T, sauchar_t *U, saidx_t *A, saidx_t n); +``` + +## Example Usage +```c +#include <stdio.h> +#include <stdlib.h> +#include <string.h> + +#include <divsufsort.h> + +int main() { + // intput data + char *Text = "abracadabra"; + int n = strlen(Text); + int i, j; + + // allocate + int *SA = (int *)malloc(n * sizeof(int)); + + // sort + divsufsort((unsigned char *)Text, SA, n); + + // output + for(i = 0; i < n; ++i) { + printf("SA[%2d] = %2d: ", i, SA[i]); + for(j = SA[i]; j < n; ++j) { + printf("%c", Text[j]); + } + printf("$\n"); + } + + // deallocate + free(SA); + + return 0; +} +``` +See the [examples](examples) directory for a few other examples. + +## Benchmarks +See [Benchmarks](https://github.com/y-256/libdivsufsort/blob/wiki/SACA_Benchmarks.md) page for details. + +## License +libdivsufsort is released under the [MIT license](LICENSE "MIT license"). +> The MIT License (MIT) +> +> Copyright (c) 2003 Yuta Mori All rights reserved. +> +> Permission is hereby granted, free of charge, to any person obtaining a copy +> of this software and associated documentation files (the "Software"), to deal +> in the Software without restriction, including without limitation the rights +> to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +> copies of the Software, and to permit persons to whom the Software is +> furnished to do so, subject to the following conditions: +> +> The above copyright notice and this permission notice shall be included in all +> copies or substantial portions of the Software. +> +> THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +> IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +> FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +> AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +> LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +> OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +> SOFTWARE. + +## Author +* Yuta Mori Added: vendor/libdivsufsort/dist/VERSION.cmake ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ vendor/libdivsufsort/dist/VERSION.cmake Sun Jul 24 20:39:43 2016 (r303275) @@ -0,0 +1,23 @@ +set(PROJECT_VERSION_MAJOR "2") +set(PROJECT_VERSION_MINOR "0") +set(PROJECT_VERSION_PATCH "2") +set(PROJECT_VERSION_EXTRA "-1") +set(PROJECT_VERSION "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}") +set(PROJECT_VERSION_FULL "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}.${PROJECT_VERSION_PATCH}${PROJECT_VERSION_EXTRA}") + +set(LIBRARY_VERSION "3.0.1") +set(LIBRARY_SOVERSION "3") + +## Git revision number ## +if(EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/.git") + execute_process(COMMAND git describe --tags HEAD + WORKING_DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}" + OUTPUT_VARIABLE GIT_DESCRIBE_TAGS ERROR_QUIET) + if(GIT_DESCRIBE_TAGS) + string(REGEX REPLACE "^v(.*)" "\\1" GIT_REVISION "${GIT_DESCRIBE_TAGS}") + string(STRIP "${GIT_REVISION}" GIT_REVISION) + if(GIT_REVISION) + set(PROJECT_VERSION_FULL "${GIT_REVISION}") + endif(GIT_REVISION) + endif(GIT_DESCRIBE_TAGS) +endif(EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/.git") Added: vendor/libdivsufsort/dist/examples/CMakeLists.txt ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ vendor/libdivsufsort/dist/examples/CMakeLists.txt Sun Jul 24 20:39:43 2016 (r303275) @@ -0,0 +1,11 @@ +## Add definitions ## +add_definitions(-D_LARGEFILE_SOURCE -D_LARGE_FILES -D_FILE_OFFSET_BITS=64) + +## Targets ## +include_directories("${CMAKE_CURRENT_SOURCE_DIR}/../include" + "${CMAKE_CURRENT_BINARY_DIR}/../include") +link_directories("${CMAKE_CURRENT_BINARY_DIR}/../lib") +foreach(src suftest mksary sasearch bwt unbwt) + add_executable(${src} ${src}.c) + target_link_libraries(${src} divsufsort) +endforeach(src) Added: vendor/libdivsufsort/dist/examples/bwt.c ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ vendor/libdivsufsort/dist/examples/bwt.c Sun Jul 24 20:39:43 2016 (r303275) @@ -0,0 +1,220 @@ +/* + * bwt.c for libdivsufsort + * Copyright (c) 2003-2008 Yuta Mori All Rights Reserved. + * + * Permission is hereby granted, free of charge, to any person + * obtaining a copy of this software and associated documentation + * files (the "Software"), to deal in the Software without + * restriction, including without limitation the rights to use, + * copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the + * Software is furnished to do so, subject to the following + * conditions: + * + * The above copyright notice and this permission notice shall be + * included in all copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, + * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES + * OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND + * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT + * HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, + * WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING + * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR + * OTHER DEALINGS IN THE SOFTWARE. + */ + +#if HAVE_CONFIG_H +# include "config.h" +#endif +#include <stdio.h> +#if HAVE_STRING_H +# include <string.h> +#endif +#if HAVE_STDLIB_H +# include <stdlib.h> +#endif +#if HAVE_MEMORY_H +# include <memory.h> +#endif +#if HAVE_STDDEF_H +# include <stddef.h> +#endif +#if HAVE_STRINGS_H +# include <strings.h> +#endif +#if HAVE_SYS_TYPES_H +# include <sys/types.h> +#endif +#if HAVE_IO_H && HAVE_FCNTL_H +# include <io.h> +# include <fcntl.h> +#endif +#include <time.h> +#include <divsufsort.h> +#include "lfs.h" + + +static +size_t +write_int(FILE *fp, saidx_t n) { + unsigned char c[4]; + c[0] = (unsigned char)((n >> 0) & 0xff), c[1] = (unsigned char)((n >> 8) & 0xff), + c[2] = (unsigned char)((n >> 16) & 0xff), c[3] = (unsigned char)((n >> 24) & 0xff); + return fwrite(c, sizeof(unsigned char), 4, fp); +} + +static +void +print_help(const char *progname, int status) { + fprintf(stderr, + "bwt, a burrows-wheeler transform program, version %s.\n", + divsufsort_version()); + fprintf(stderr, "usage: %s [-b num] INFILE OUTFILE\n", progname); + fprintf(stderr, " -b num set block size to num MiB [1..512] (default: 32)\n\n"); + exit(status); +} + +int +main(int argc, const char *argv[]) { + FILE *fp, *ofp; + const char *fname, *ofname; + sauchar_t *T; + saidx_t *SA; + LFS_OFF_T n; + size_t m; + saidx_t pidx; + clock_t start,finish; + saint_t i, blocksize = 32, needclose = 3; + + /* Check arguments. */ + if((argc == 1) || + (strcmp(argv[1], "-h") == 0) || + (strcmp(argv[1], "--help") == 0)) { print_help(argv[0], EXIT_SUCCESS); } + if((argc != 3) && (argc != 5)) { print_help(argv[0], EXIT_FAILURE); } + i = 1; + if(argc == 5) { + if(strcmp(argv[i], "-b") != 0) { print_help(argv[0], EXIT_FAILURE); } + blocksize = atoi(argv[i + 1]); + if(blocksize < 0) { blocksize = 1; } + else if(512 < blocksize) { blocksize = 512; } + i += 2; + } + blocksize <<= 20; + + /* Open a file for reading. */ + if(strcmp(argv[i], "-") != 0) { +#if HAVE_FOPEN_S + if(fopen_s(&fp, fname = argv[i], "rb") != 0) { +#else + if((fp = LFS_FOPEN(fname = argv[i], "rb")) == NULL) { +#endif + fprintf(stderr, "%s: Cannot open file `%s': ", argv[0], fname); + perror(NULL); + exit(EXIT_FAILURE); + } + } else { +#if HAVE__SETMODE && HAVE__FILENO + if(_setmode(_fileno(stdin), _O_BINARY) == -1) { + fprintf(stderr, "%s: Cannot set mode: ", argv[0]); + perror(NULL); + exit(EXIT_FAILURE); + } +#endif + fp = stdin; + fname = "stdin"; + needclose ^= 1; + } + i += 1; + + /* Open a file for writing. */ + if(strcmp(argv[i], "-") != 0) { +#if HAVE_FOPEN_S + if(fopen_s(&ofp, ofname = argv[i], "wb") != 0) { +#else + if((ofp = LFS_FOPEN(ofname = argv[i], "wb")) == NULL) { +#endif + fprintf(stderr, "%s: Cannot open file `%s': ", argv[0], ofname); + perror(NULL); + exit(EXIT_FAILURE); + } + } else { +#if HAVE__SETMODE && HAVE__FILENO + if(_setmode(_fileno(stdout), _O_BINARY) == -1) { + fprintf(stderr, "%s: Cannot set mode: ", argv[0]); + perror(NULL); + exit(EXIT_FAILURE); + } +#endif + ofp = stdout; + ofname = "stdout"; + needclose ^= 2; + } + + /* Get the file size. */ + if(LFS_FSEEK(fp, 0, SEEK_END) == 0) { + n = LFS_FTELL(fp); + rewind(fp); + if(n < 0) { + fprintf(stderr, "%s: Cannot ftell `%s': ", argv[0], fname); + perror(NULL); + exit(EXIT_FAILURE); + } + if(0x20000000L < n) { n = 0x20000000L; } + if((blocksize == 0) || (n < blocksize)) { blocksize = (saidx_t)n; } + } else if(blocksize == 0) { blocksize = 32 << 20; } + + /* Allocate 5blocksize bytes of memory. */ + T = (sauchar_t *)malloc(blocksize * sizeof(sauchar_t)); + SA = (saidx_t *)malloc(blocksize * sizeof(saidx_t)); + if((T == NULL) || (SA == NULL)) { + fprintf(stderr, "%s: Cannot allocate memory.\n", argv[0]); + exit(EXIT_FAILURE); + } + + /* Write the blocksize. */ + if(write_int(ofp, blocksize) != 4) { + fprintf(stderr, "%s: Cannot write to `%s': ", argv[0], ofname); + perror(NULL); + exit(EXIT_FAILURE); + } + + fprintf(stderr, " BWT (blocksize %" PRIdSAINT_T ") ... ", blocksize); + start = clock(); + for(n = 0; 0 < (m = fread(T, sizeof(sauchar_t), blocksize, fp)); n += m) { + /* Burrows-Wheeler Transform. */ + pidx = divbwt(T, T, SA, m); + if(pidx < 0) { + fprintf(stderr, "%s (bw_transform): %s.\n", + argv[0], + (pidx == -1) ? "Invalid arguments" : "Cannot allocate memory"); + exit(EXIT_FAILURE); + } + + /* Write the bwted data. */ + if((write_int(ofp, pidx) != 4) || + (fwrite(T, sizeof(sauchar_t), m, ofp) != m)) { + fprintf(stderr, "%s: Cannot write to `%s': ", argv[0], ofname); + perror(NULL); + exit(EXIT_FAILURE); + } + } + if(ferror(fp)) { + fprintf(stderr, "%s: Cannot read from `%s': ", argv[0], fname); + perror(NULL); + exit(EXIT_FAILURE); + } + finish = clock(); + fprintf(stderr, "%" PRIdOFF_T " bytes: %.4f sec\n", + n, (double)(finish - start) / (double)CLOCKS_PER_SEC); + + /* Close files */ + if(needclose & 1) { fclose(fp); } + if(needclose & 2) { fclose(ofp); } + + /* Deallocate memory. */ + free(SA); + free(T); + + return 0; +} Added: vendor/libdivsufsort/dist/examples/mksary.c ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ vendor/libdivsufsort/dist/examples/mksary.c Sun Jul 24 20:39:43 2016 (r303275) @@ -0,0 +1,193 @@ +/* + * mksary.c for libdivsufsort + * Copyright (c) 2003-2008 Yuta Mori All Rights Reserved. + * + * Permission is hereby granted, free of charge, to any person + * obtaining a copy of this software and associated documentation + * files (the "Software"), to deal in the Software without + * restriction, including without limitation the rights to use, + * copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the + * Software is furnished to do so, subject to the following + * conditions: + * + * The above copyright notice and this permission notice shall be + * included in all copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, + * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES + * OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND + * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT + * HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, + * WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING + * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR + * OTHER DEALINGS IN THE SOFTWARE. + */ + +#if HAVE_CONFIG_H +# include "config.h" +#endif +#include <stdio.h> +#if HAVE_STRING_H +# include <string.h> +#endif +#if HAVE_STDLIB_H +# include <stdlib.h> +#endif +#if HAVE_MEMORY_H +# include <memory.h> +#endif +#if HAVE_STDDEF_H +# include <stddef.h> +#endif +#if HAVE_STRINGS_H +# include <strings.h> +#endif +#if HAVE_SYS_TYPES_H +# include <sys/types.h> +#endif +#if HAVE_IO_H && HAVE_FCNTL_H +# include <io.h> +# include <fcntl.h> +#endif +#include <time.h> +#include <divsufsort.h> +#include "lfs.h" + + +static +void +print_help(const char *progname, int status) { + fprintf(stderr, + "mksary, a simple suffix array builder, version %s.\n", + divsufsort_version()); + fprintf(stderr, "usage: %s INFILE OUTFILE\n\n", progname); + exit(status); +} + +int +main(int argc, const char *argv[]) { + FILE *fp, *ofp; + const char *fname, *ofname; + sauchar_t *T; + saidx_t *SA; + LFS_OFF_T n; + clock_t start, finish; + saint_t needclose = 3; + + /* Check arguments. */ + if((argc == 1) || + (strcmp(argv[1], "-h") == 0) || + (strcmp(argv[1], "--help") == 0)) { print_help(argv[0], EXIT_SUCCESS); } + if(argc != 3) { print_help(argv[0], EXIT_FAILURE); } + + /* Open a file for reading. */ + if(strcmp(argv[1], "-") != 0) { +#if HAVE_FOPEN_S + if(fopen_s(&fp, fname = argv[1], "rb") != 0) { +#else + if((fp = LFS_FOPEN(fname = argv[1], "rb")) == NULL) { +#endif + fprintf(stderr, "%s: Cannot open file `%s': ", argv[0], fname); + perror(NULL); + exit(EXIT_FAILURE); + } + } else { +#if HAVE__SETMODE && HAVE__FILENO + if(_setmode(_fileno(stdin), _O_BINARY) == -1) { + fprintf(stderr, "%s: Cannot set mode: ", argv[0]); + perror(NULL); + exit(EXIT_FAILURE); + } +#endif + fp = stdin; + fname = "stdin"; + needclose ^= 1; + } + + /* Open a file for writing. */ + if(strcmp(argv[2], "-") != 0) { +#if HAVE_FOPEN_S + if(fopen_s(&ofp, ofname = argv[2], "wb") != 0) { +#else + if((ofp = LFS_FOPEN(ofname = argv[2], "wb")) == NULL) { +#endif + fprintf(stderr, "%s: Cannot open file `%s': ", argv[0], ofname); + perror(NULL); + exit(EXIT_FAILURE); + } + } else { +#if HAVE__SETMODE && HAVE__FILENO + if(_setmode(_fileno(stdout), _O_BINARY) == -1) { + fprintf(stderr, "%s: Cannot set mode: ", argv[0]); + perror(NULL); + exit(EXIT_FAILURE); + } +#endif + ofp = stdout; + ofname = "stdout"; + needclose ^= 2; + } + + /* Get the file size. */ + if(LFS_FSEEK(fp, 0, SEEK_END) == 0) { + n = LFS_FTELL(fp); + rewind(fp); + if(n < 0) { + fprintf(stderr, "%s: Cannot ftell `%s': ", argv[0], fname); + perror(NULL); + exit(EXIT_FAILURE); + } + if(0x7fffffff <= n) { + fprintf(stderr, "%s: Input file `%s' is too big.\n", argv[0], fname); + exit(EXIT_FAILURE); + } + } else { + fprintf(stderr, "%s: Cannot fseek `%s': ", argv[0], fname); + perror(NULL); + exit(EXIT_FAILURE); + } + + /* Allocate 5blocksize bytes of memory. */ + T = (sauchar_t *)malloc((size_t)n * sizeof(sauchar_t)); + SA = (saidx_t *)malloc((size_t)n * sizeof(saidx_t)); + if((T == NULL) || (SA == NULL)) { + fprintf(stderr, "%s: Cannot allocate memory.\n", argv[0]); *** DIFF OUTPUT TRUNCATED AT 1000 LINES ***
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