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Date:      Wed, 11 Oct 2023 12:59:48 GMT
From:      Po-Chuan Hsieh <sunpoet@FreeBSD.org>
To:        ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org
Subject:   git: 0567b2de2cf6 - main - biology/p5-BioPerl: Update to 1.007008
Message-ID:  <202310111259.39BCxmrj036600@gitrepo.freebsd.org>

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The branch main has been updated by sunpoet:

URL: https://cgit.FreeBSD.org/ports/commit/?id=0567b2de2cf6d1f7d9fe6c7403b6d4db6cb21e40

commit 0567b2de2cf6d1f7d9fe6c7403b6d4db6cb21e40
Author:     Po-Chuan Hsieh <sunpoet@FreeBSD.org>
AuthorDate: 2023-10-11 12:57:41 +0000
Commit:     Po-Chuan Hsieh <sunpoet@FreeBSD.org>
CommitDate: 2023-10-11 12:57:41 +0000

    biology/p5-BioPerl: Update to 1.007008
    
    - Update WWW
    - Sort *_DEPENDS
    
    Changes:        https://metacpan.org/dist/BioPerl/changes
---
 biology/p5-BioPerl/Makefile  | 11 +++++------
 biology/p5-BioPerl/distinfo  |  6 +++---
 biology/p5-BioPerl/pkg-plist |  2 --
 3 files changed, 8 insertions(+), 11 deletions(-)

diff --git a/biology/p5-BioPerl/Makefile b/biology/p5-BioPerl/Makefile
index 287a930aa726..f91c0a5be426 100644
--- a/biology/p5-BioPerl/Makefile
+++ b/biology/p5-BioPerl/Makefile
@@ -1,15 +1,15 @@
 PORTNAME=	BioPerl
-PORTVERSION=	1.007007
-PORTREVISION=	1
+PORTVERSION=	1.007008
 CATEGORIES=	biology perl5
 MASTER_SITES=	CPAN
 MASTER_SITE_SUBDIR=	CPAN:CJFIELDS
 PKGNAMEPREFIX=	p5-
-DISTNAME=	${PORTNAME}-${PORTVERSION:R}${PORTVERSION:E:S|00|.|g}
+DISTNAME=	BioPerl-${PORTVERSION:R}${PORTVERSION:E:S|00|.|g}
 
 MAINTAINER=	sunpoet@FreeBSD.org
 COMMENT=	Collection of Perl modules for bioinformatics
-WWW=		https://bioperl.org/
+WWW=		https://metacpan.org/dist/BioPerl \
+		https://bioperl.org/
 
 LICENSE=	ART10 GPLv1+
 LICENSE_COMB=	dual
@@ -29,12 +29,11 @@ RUN_DEPENDS=	p5-Data-Stag>=0:devel/p5-Data-Stag \
 		p5-Test-Most>=0:devel/p5-Test-Most \
 		p5-Test-RequiresInternet>=0:devel/p5-Test-RequiresInternet \
 		p5-URI>=0:net/p5-URI \
-		p5-XML-DOM-XPath>=0:textproc/p5-XML-DOM-XPath \
 		p5-XML-DOM>=0:textproc/p5-XML-DOM \
 		p5-XML-LibXML>=0:textproc/p5-XML-LibXML \
+		p5-XML-SAX>=0:textproc/p5-XML-SAX \
 		p5-XML-SAX-Base>=0:textproc/p5-XML-SAX-Base \
 		p5-XML-SAX-Writer>=0:textproc/p5-XML-SAX-Writer \
-		p5-XML-SAX>=0:textproc/p5-XML-SAX \
 		p5-XML-Twig>=0:textproc/p5-XML-Twig \
 		p5-XML-Writer>=0:textproc/p5-XML-Writer \
 		p5-YAML>=0:textproc/p5-YAML \
diff --git a/biology/p5-BioPerl/distinfo b/biology/p5-BioPerl/distinfo
index 35db2f57ddf6..01ab232e2aa9 100644
--- a/biology/p5-BioPerl/distinfo
+++ b/biology/p5-BioPerl/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1575793851
-SHA256 (BioPerl-1.7.7.tar.gz) = 730e2bd38b7550bf6bbd5bca50d019a70cca514559702c1389d770ff69cff1bb
-SIZE (BioPerl-1.7.7.tar.gz) = 7532782
+TIMESTAMP = 1696904108
+SHA256 (BioPerl-1.7.8.tar.gz) = c490a3be7715ea6e4305efd9710e5edab82dabc55fd786b6505b550a30d71738
+SIZE (BioPerl-1.7.8.tar.gz) = 7527658
diff --git a/biology/p5-BioPerl/pkg-plist b/biology/p5-BioPerl/pkg-plist
index afa3cb8732ea..1851c68dcf25 100644
--- a/biology/p5-BioPerl/pkg-plist
+++ b/biology/p5-BioPerl/pkg-plist
@@ -384,7 +384,6 @@ bin/bp_unflatten_seq
 %%SITE_PERL%%/Bio/SeqIO/gbxml.pm
 %%SITE_PERL%%/Bio/SeqIO/gcg.pm
 %%SITE_PERL%%/Bio/SeqIO/genbank.pm
-%%SITE_PERL%%/Bio/SeqIO/interpro.pm
 %%SITE_PERL%%/Bio/SeqIO/kegg.pm
 %%SITE_PERL%%/Bio/SeqIO/largefasta.pm
 %%SITE_PERL%%/Bio/SeqIO/locuslink.pm
@@ -896,7 +895,6 @@ bin/bp_unflatten_seq
 %%PERL5_MAN3%%/Bio::SeqIO::gbxml.3.gz
 %%PERL5_MAN3%%/Bio::SeqIO::gcg.3.gz
 %%PERL5_MAN3%%/Bio::SeqIO::genbank.3.gz
-%%PERL5_MAN3%%/Bio::SeqIO::interpro.3.gz
 %%PERL5_MAN3%%/Bio::SeqIO::kegg.3.gz
 %%PERL5_MAN3%%/Bio::SeqIO::largefasta.3.gz
 %%PERL5_MAN3%%/Bio::SeqIO::locuslink.3.gz



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