Date: Wed, 11 Oct 2023 12:59:48 GMT From: Po-Chuan Hsieh <sunpoet@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 0567b2de2cf6 - main - biology/p5-BioPerl: Update to 1.007008 Message-ID: <202310111259.39BCxmrj036600@gitrepo.freebsd.org>
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The branch main has been updated by sunpoet: URL: https://cgit.FreeBSD.org/ports/commit/?id=0567b2de2cf6d1f7d9fe6c7403b6d4db6cb21e40 commit 0567b2de2cf6d1f7d9fe6c7403b6d4db6cb21e40 Author: Po-Chuan Hsieh <sunpoet@FreeBSD.org> AuthorDate: 2023-10-11 12:57:41 +0000 Commit: Po-Chuan Hsieh <sunpoet@FreeBSD.org> CommitDate: 2023-10-11 12:57:41 +0000 biology/p5-BioPerl: Update to 1.007008 - Update WWW - Sort *_DEPENDS Changes: https://metacpan.org/dist/BioPerl/changes --- biology/p5-BioPerl/Makefile | 11 +++++------ biology/p5-BioPerl/distinfo | 6 +++--- biology/p5-BioPerl/pkg-plist | 2 -- 3 files changed, 8 insertions(+), 11 deletions(-) diff --git a/biology/p5-BioPerl/Makefile b/biology/p5-BioPerl/Makefile index 287a930aa726..f91c0a5be426 100644 --- a/biology/p5-BioPerl/Makefile +++ b/biology/p5-BioPerl/Makefile @@ -1,15 +1,15 @@ PORTNAME= BioPerl -PORTVERSION= 1.007007 -PORTREVISION= 1 +PORTVERSION= 1.007008 CATEGORIES= biology perl5 MASTER_SITES= CPAN MASTER_SITE_SUBDIR= CPAN:CJFIELDS PKGNAMEPREFIX= p5- -DISTNAME= ${PORTNAME}-${PORTVERSION:R}${PORTVERSION:E:S|00|.|g} +DISTNAME= BioPerl-${PORTVERSION:R}${PORTVERSION:E:S|00|.|g} MAINTAINER= sunpoet@FreeBSD.org COMMENT= Collection of Perl modules for bioinformatics -WWW= https://bioperl.org/ +WWW= https://metacpan.org/dist/BioPerl \ + https://bioperl.org/ LICENSE= ART10 GPLv1+ LICENSE_COMB= dual @@ -29,12 +29,11 @@ RUN_DEPENDS= p5-Data-Stag>=0:devel/p5-Data-Stag \ p5-Test-Most>=0:devel/p5-Test-Most \ p5-Test-RequiresInternet>=0:devel/p5-Test-RequiresInternet \ p5-URI>=0:net/p5-URI \ - p5-XML-DOM-XPath>=0:textproc/p5-XML-DOM-XPath \ p5-XML-DOM>=0:textproc/p5-XML-DOM \ p5-XML-LibXML>=0:textproc/p5-XML-LibXML \ + p5-XML-SAX>=0:textproc/p5-XML-SAX \ p5-XML-SAX-Base>=0:textproc/p5-XML-SAX-Base \ p5-XML-SAX-Writer>=0:textproc/p5-XML-SAX-Writer \ - p5-XML-SAX>=0:textproc/p5-XML-SAX \ p5-XML-Twig>=0:textproc/p5-XML-Twig \ p5-XML-Writer>=0:textproc/p5-XML-Writer \ p5-YAML>=0:textproc/p5-YAML \ diff --git a/biology/p5-BioPerl/distinfo b/biology/p5-BioPerl/distinfo index 35db2f57ddf6..01ab232e2aa9 100644 --- a/biology/p5-BioPerl/distinfo +++ b/biology/p5-BioPerl/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1575793851 -SHA256 (BioPerl-1.7.7.tar.gz) = 730e2bd38b7550bf6bbd5bca50d019a70cca514559702c1389d770ff69cff1bb -SIZE (BioPerl-1.7.7.tar.gz) = 7532782 +TIMESTAMP = 1696904108 +SHA256 (BioPerl-1.7.8.tar.gz) = c490a3be7715ea6e4305efd9710e5edab82dabc55fd786b6505b550a30d71738 +SIZE (BioPerl-1.7.8.tar.gz) = 7527658 diff --git a/biology/p5-BioPerl/pkg-plist b/biology/p5-BioPerl/pkg-plist index afa3cb8732ea..1851c68dcf25 100644 --- a/biology/p5-BioPerl/pkg-plist +++ b/biology/p5-BioPerl/pkg-plist @@ -384,7 +384,6 @@ bin/bp_unflatten_seq %%SITE_PERL%%/Bio/SeqIO/gbxml.pm %%SITE_PERL%%/Bio/SeqIO/gcg.pm %%SITE_PERL%%/Bio/SeqIO/genbank.pm -%%SITE_PERL%%/Bio/SeqIO/interpro.pm %%SITE_PERL%%/Bio/SeqIO/kegg.pm %%SITE_PERL%%/Bio/SeqIO/largefasta.pm %%SITE_PERL%%/Bio/SeqIO/locuslink.pm @@ -896,7 +895,6 @@ bin/bp_unflatten_seq %%PERL5_MAN3%%/Bio::SeqIO::gbxml.3.gz %%PERL5_MAN3%%/Bio::SeqIO::gcg.3.gz %%PERL5_MAN3%%/Bio::SeqIO::genbank.3.gz -%%PERL5_MAN3%%/Bio::SeqIO::interpro.3.gz %%PERL5_MAN3%%/Bio::SeqIO::kegg.3.gz %%PERL5_MAN3%%/Bio::SeqIO::largefasta.3.gz %%PERL5_MAN3%%/Bio::SeqIO::locuslink.3.gz
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