Date: Wed, 20 May 2026 12:29:39 +0000 From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 48babdb6fc1e - main - math/stanmath: update 4.8=?utf-8?Q?=2E1 =E2=86=92 5?=.3.0 Message-ID: <6a0da933.3288a.565bf203@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=48babdb6fc1e81420df18eaa644ef4de1ac2f326 commit 48babdb6fc1e81420df18eaa644ef4de1ac2f326 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2026-05-20 06:00:27 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2026-05-20 12:29:24 +0000 math/stanmath: update 4.8.1 → 5.3.0 --- math/stanmath/Makefile | 2 +- math/stanmath/distinfo | 6 +- math/stanmath/files/patch-make_compiler__flags | 4 +- math/stanmath/files/patch-runTests.py | 23 ++- math/stanmath/pkg-plist | 272 +++++++++++++------------ 5 files changed, 162 insertions(+), 145 deletions(-) diff --git a/math/stanmath/Makefile b/math/stanmath/Makefile index 49abb795e4dd..bc3beb0c8fe5 100644 --- a/math/stanmath/Makefile +++ b/math/stanmath/Makefile @@ -1,6 +1,6 @@ PORTNAME= stanmath DISTVERSIONPREFIX= v -DISTVERSION= 4.8.1 +DISTVERSION= 5.3.0 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org diff --git a/math/stanmath/distinfo b/math/stanmath/distinfo index 0d6667634bee..ac648c99ed6a 100644 --- a/math/stanmath/distinfo +++ b/math/stanmath/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1706081004 -SHA256 (stan-dev-math-v4.8.1_GH0.tar.gz) = 78e115c89c298fb9e6fa5941b7e39c84cfea0a8f491a0dc556ab5746d5699136 -SIZE (stan-dev-math-v4.8.1_GH0.tar.gz) = 30104206 +TIMESTAMP = 1779256536 +SHA256 (stan-dev-math-v5.3.0_GH0.tar.gz) = 6ad05c37e7df8add7d0089489249ddaadb57e30cead8cdd1323f4e1283c4fe64 +SIZE (stan-dev-math-v5.3.0_GH0.tar.gz) = 28936192 diff --git a/math/stanmath/files/patch-make_compiler__flags b/math/stanmath/files/patch-make_compiler__flags index 4bb3e44294c9..d06bb45b19c9 100644 --- a/math/stanmath/files/patch-make_compiler__flags +++ b/math/stanmath/files/patch-make_compiler__flags @@ -1,6 +1,6 @@ ---- make/compiler_flags.orig 2021-08-28 03:13:59 UTC +--- make/compiler_flags.orig 2026-05-19 13:36:01 UTC +++ make/compiler_flags -@@ -274,9 +274,9 @@ LDLIBS_TBB ?= $(LDFLAGS_TBB) +@@ -332,9 +332,9 @@ endif endif diff --git a/math/stanmath/files/patch-runTests.py b/math/stanmath/files/patch-runTests.py index 19b25694039f..7178ca762362 100644 --- a/math/stanmath/files/patch-runTests.py +++ b/math/stanmath/files/patch-runTests.py @@ -1,11 +1,20 @@ ---- runTests.py.orig 2021-08-28 03:33:35 UTC +--- runTests.py.orig 2026-05-20 05:57:17 UTC +++ runTests.py -@@ -172,7 +172,7 @@ def generateTests(j): - if isWin(): - doCommand("mingw32-make -j%d generate-tests -s" % (j or 1)) - else: -- doCommand("make -j%d generate-tests -s" % (j or 1)) -+ doCommand("gmake -j%d generate-tests -s" % (j or 1)) +@@ -185,7 +185,7 @@ def generateTests(j): + + def generateTests(j): + """Generate all tests and pass along the j parameter to make.""" +- doCommand("make -j%d generate-tests -s" % (j or 1)) ++ doCommand("gmake -j%d generate-tests -s" % (j or 1)) def divide_chunks(l, n): +@@ -243,7 +243,7 @@ def makeTest(name, j): + + def makeTest(name, j): + """Run the make command for a given single test.""" +- doCommand("make -j%d %s" % (j or 1, name)) ++ doCommand("gmake -j%d %s" % (j or 1, name)) + + + def commandExists(command): diff --git a/math/stanmath/pkg-plist b/math/stanmath/pkg-plist index 30ac8e0bd7c5..eabe6ba01a34 100644 --- a/math/stanmath/pkg-plist +++ b/math/stanmath/pkg-plist @@ -1,5 +1,7 @@ include/stan/math.hpp include/stan/math/fwd.hpp +include/stan/math/fwd/constraint.hpp +include/stan/math/fwd/constraint/unit_vector_constrain.hpp include/stan/math/fwd/core.hpp include/stan/math/fwd/core/fvar.hpp include/stan/math/fwd/core/operator_addition.hpp @@ -60,7 +62,7 @@ include/stan/math/fwd/fun/fmin.hpp include/stan/math/fwd/fun/fmod.hpp include/stan/math/fwd/fun/gamma_p.hpp include/stan/math/fwd/fun/gamma_q.hpp -include/stan/math/fwd/fun/grad_inc_beta.hpp +include/stan/math/fwd/fun/hypergeometric_1F0.hpp include/stan/math/fwd/fun/hypergeometric_2F1.hpp include/stan/math/fwd/fun/hypergeometric_pFq.hpp include/stan/math/fwd/fun/hypot.hpp @@ -134,11 +136,11 @@ include/stan/math/fwd/fun/tanh.hpp include/stan/math/fwd/fun/tcrossprod.hpp include/stan/math/fwd/fun/tgamma.hpp include/stan/math/fwd/fun/to_fvar.hpp +include/stan/math/fwd/fun/trace_dot.hpp include/stan/math/fwd/fun/trace_quad_form.hpp include/stan/math/fwd/fun/trigamma.hpp include/stan/math/fwd/fun/trunc.hpp include/stan/math/fwd/fun/typedefs.hpp -include/stan/math/fwd/fun/unit_vector_constrain.hpp include/stan/math/fwd/fun/value_of.hpp include/stan/math/fwd/fun/value_of_rec.hpp include/stan/math/fwd/functor.hpp @@ -156,11 +158,14 @@ include/stan/math/fwd/meta/is_fvar.hpp include/stan/math/fwd/meta/partials_type.hpp include/stan/math/fwd/prob.hpp include/stan/math/fwd/prob/std_normal_log_qf.hpp +include/stan/math/fwd/prob/student_t_qf.hpp include/stan/math/memory/stack_alloc.hpp include/stan/math/mix.hpp include/stan/math/mix/fun.hpp include/stan/math/mix/fun/typedefs.hpp include/stan/math/mix/functor.hpp +include/stan/math/mix/functor/barzilai_borwein_step_size.hpp +include/stan/math/mix/functor/conditional_copy_and_promote.hpp include/stan/math/mix/functor/derivative.hpp include/stan/math/mix/functor/finite_diff_grad_hessian.hpp include/stan/math/mix/functor/finite_diff_grad_hessian_auto.hpp @@ -168,9 +173,24 @@ include/stan/math/mix/functor/grad_hessian.hpp include/stan/math/mix/functor/grad_tr_mat_times_hessian.hpp include/stan/math/mix/functor/gradient_dot_vector.hpp include/stan/math/mix/functor/hessian.hpp +include/stan/math/mix/functor/hessian_block_diag.hpp include/stan/math/mix/functor/hessian_times_vector.hpp +include/stan/math/mix/functor/laplace_base_rng.hpp +include/stan/math/mix/functor/laplace_likelihood.hpp +include/stan/math/mix/functor/laplace_marginal_density.hpp +include/stan/math/mix/functor/laplace_marginal_density_estimator.hpp include/stan/math/mix/functor/partial_derivative.hpp +include/stan/math/mix/functor/wolfe_line_search.hpp include/stan/math/mix/meta.hpp +include/stan/math/mix/prob.hpp +include/stan/math/mix/prob/laplace_latent_bernoulli_logit_rng.hpp +include/stan/math/mix/prob/laplace_latent_neg_binomial_2_log_rng.hpp +include/stan/math/mix/prob/laplace_latent_poisson_log_rng.hpp +include/stan/math/mix/prob/laplace_latent_rng.hpp +include/stan/math/mix/prob/laplace_marginal.hpp +include/stan/math/mix/prob/laplace_marginal_bernoulli_logit_lpmf.hpp +include/stan/math/mix/prob/laplace_marginal_neg_binomial_2_log_lpmf.hpp +include/stan/math/mix/prob/laplace_marginal_poisson_log_lpmf.hpp include/stan/math/opencl/buffer_types.hpp include/stan/math/opencl/cholesky_decompose.hpp include/stan/math/opencl/copy.hpp @@ -249,6 +269,7 @@ include/stan/math/opencl/kernels/device_functions/log_inv_logit.hpp include/stan/math/opencl/kernels/device_functions/log_inv_logit_diff.hpp include/stan/math/opencl/kernels/device_functions/logit.hpp include/stan/math/opencl/kernels/device_functions/multiply_log.hpp +include/stan/math/opencl/kernels/device_functions/std_normal_lcdf.hpp include/stan/math/opencl/kernels/device_functions/trigamma.hpp include/stan/math/opencl/kernels/diag_inv.hpp include/stan/math/opencl/kernels/divide_columns.hpp @@ -306,6 +327,11 @@ include/stan/math/opencl/prim/col.hpp include/stan/math/opencl/prim/cols.hpp include/stan/math/opencl/prim/columns_dot_product.hpp include/stan/math/opencl/prim/columns_dot_self.hpp +include/stan/math/opencl/prim/constraint/lb_constrain.hpp +include/stan/math/opencl/prim/constraint/lub_constrain.hpp +include/stan/math/opencl/prim/constraint/offset_multiplier_constrain.hpp +include/stan/math/opencl/prim/constraint/ub_constrain.hpp +include/stan/math/opencl/prim/constraint/unit_vector_constrain.hpp include/stan/math/opencl/prim/crossprod.hpp include/stan/math/opencl/prim/cumulative_sum.hpp include/stan/math/opencl/prim/diag_matrix.hpp @@ -353,7 +379,6 @@ include/stan/math/opencl/prim/inv_chi_square_lpdf.hpp include/stan/math/opencl/prim/inv_cloglog.hpp include/stan/math/opencl/prim/inv_gamma_lpdf.hpp include/stan/math/opencl/prim/inv_sqrt.hpp -include/stan/math/opencl/prim/lb_constrain.hpp include/stan/math/opencl/prim/log_mix.hpp include/stan/math/opencl/prim/log_softmax.hpp include/stan/math/opencl/prim/log_sum_exp.hpp @@ -365,7 +390,6 @@ include/stan/math/opencl/prim/lognormal_cdf.hpp include/stan/math/opencl/prim/lognormal_lccdf.hpp include/stan/math/opencl/prim/lognormal_lcdf.hpp include/stan/math/opencl/prim/lognormal_lpdf.hpp -include/stan/math/opencl/prim/lub_constrain.hpp include/stan/math/opencl/prim/matrix_power.hpp include/stan/math/opencl/prim/mdivide_left_tri_low.hpp include/stan/math/opencl/prim/mdivide_right_tri_low.hpp @@ -383,7 +407,6 @@ include/stan/math/opencl/prim/normal_lccdf.hpp include/stan/math/opencl/prim/normal_lcdf.hpp include/stan/math/opencl/prim/normal_lpdf.hpp include/stan/math/opencl/prim/num_elements.hpp -include/stan/math/opencl/prim/offset_multiplier_constrain.hpp include/stan/math/opencl/prim/ordered_logistic_glm_lpmf.hpp include/stan/math/opencl/prim/ordered_logistic_lpmf.hpp include/stan/math/opencl/prim/pareto_cdf.hpp @@ -448,17 +471,16 @@ include/stan/math/opencl/prim/to_matrix.hpp include/stan/math/opencl/prim/to_row_vector.hpp include/stan/math/opencl/prim/to_vector.hpp include/stan/math/opencl/prim/trace.hpp -include/stan/math/opencl/prim/ub_constrain.hpp include/stan/math/opencl/prim/uniform_cdf.hpp include/stan/math/opencl/prim/uniform_lccdf.hpp include/stan/math/opencl/prim/uniform_lcdf.hpp include/stan/math/opencl/prim/uniform_lpdf.hpp -include/stan/math/opencl/prim/unit_vector_constrain.hpp include/stan/math/opencl/prim/variance.hpp include/stan/math/opencl/prim/weibull_cdf.hpp include/stan/math/opencl/prim/weibull_lccdf.hpp include/stan/math/opencl/prim/weibull_lcdf.hpp include/stan/math/opencl/prim/weibull_lpdf.hpp +include/stan/math/opencl/prim_constraint.hpp include/stan/math/opencl/qr_decomposition.hpp include/stan/math/opencl/ref_type.hpp include/stan/math/opencl/ref_type_for_opencl.hpp @@ -486,6 +508,11 @@ include/stan/math/opencl/rev/ceil.hpp include/stan/math/opencl/rev/cholesky_decompose.hpp include/stan/math/opencl/rev/columns_dot_product.hpp include/stan/math/opencl/rev/columns_dot_self.hpp +include/stan/math/opencl/rev/constraint/lb_constrain.hpp +include/stan/math/opencl/rev/constraint/lub_constrain.hpp +include/stan/math/opencl/rev/constraint/offset_multiplier_constrain.hpp +include/stan/math/opencl/rev/constraint/ub_constrain.hpp +include/stan/math/opencl/rev/constraint/unit_vector_constrain.hpp include/stan/math/opencl/rev/copy.hpp include/stan/math/opencl/rev/cos.hpp include/stan/math/opencl/rev/cosh.hpp @@ -520,7 +547,6 @@ include/stan/math/opencl/rev/inv_cloglog.hpp include/stan/math/opencl/rev/inv_logit.hpp include/stan/math/opencl/rev/inv_sqrt.hpp include/stan/math/opencl/rev/inv_square.hpp -include/stan/math/opencl/rev/lb_constrain.hpp include/stan/math/opencl/rev/lbeta.hpp include/stan/math/opencl/rev/ldexp.hpp include/stan/math/opencl/rev/lgamma.hpp @@ -539,14 +565,12 @@ include/stan/math/opencl/rev/log_inv_logit_diff.hpp include/stan/math/opencl/rev/log_softmax.hpp include/stan/math/opencl/rev/log_sum_exp.hpp include/stan/math/opencl/rev/logit.hpp -include/stan/math/opencl/rev/lub_constrain.hpp include/stan/math/opencl/rev/matrix_power.hpp include/stan/math/opencl/rev/mdivide_left_tri_low.hpp include/stan/math/opencl/rev/mdivide_right_tri_low.hpp include/stan/math/opencl/rev/multiply.hpp include/stan/math/opencl/rev/multiply_log.hpp include/stan/math/opencl/rev/multiply_lower_tri_self_transpose.hpp -include/stan/math/opencl/rev/offset_multiplier_constrain.hpp include/stan/math/opencl/rev/operands_and_partials.hpp include/stan/math/opencl/rev/operator_unary_minus.hpp include/stan/math/opencl/rev/operator_unary_plus.hpp @@ -577,10 +601,9 @@ include/stan/math/opencl/rev/to_matrix.hpp include/stan/math/opencl/rev/trace.hpp include/stan/math/opencl/rev/transpose.hpp include/stan/math/opencl/rev/trunc.hpp -include/stan/math/opencl/rev/ub_constrain.hpp -include/stan/math/opencl/rev/unit_vector_constrain.hpp include/stan/math/opencl/rev/vari.hpp include/stan/math/opencl/rev/variance.hpp +include/stan/math/opencl/rev_constraint.hpp include/stan/math/opencl/scalar_type.hpp include/stan/math/opencl/stringify.hpp include/stan/math/opencl/symmetric_eigensolver.hpp @@ -590,6 +613,47 @@ include/stan/math/opencl/tridiagonalization.hpp include/stan/math/opencl/value_type.hpp include/stan/math/opencl/zeros_strict_tri.hpp include/stan/math/prim.hpp +include/stan/math/prim/constraint.hpp +include/stan/math/prim/constraint/cholesky_corr_constrain.hpp +include/stan/math/prim/constraint/cholesky_corr_free.hpp +include/stan/math/prim/constraint/cholesky_factor_constrain.hpp +include/stan/math/prim/constraint/cholesky_factor_free.hpp +include/stan/math/prim/constraint/corr_constrain.hpp +include/stan/math/prim/constraint/corr_free.hpp +include/stan/math/prim/constraint/corr_matrix_constrain.hpp +include/stan/math/prim/constraint/corr_matrix_free.hpp +include/stan/math/prim/constraint/cov_matrix_constrain.hpp +include/stan/math/prim/constraint/cov_matrix_constrain_lkj.hpp +include/stan/math/prim/constraint/cov_matrix_free.hpp +include/stan/math/prim/constraint/cov_matrix_free_lkj.hpp +include/stan/math/prim/constraint/identity_constrain.hpp +include/stan/math/prim/constraint/identity_free.hpp +include/stan/math/prim/constraint/lb_constrain.hpp +include/stan/math/prim/constraint/lb_free.hpp +include/stan/math/prim/constraint/lub_constrain.hpp +include/stan/math/prim/constraint/lub_free.hpp +include/stan/math/prim/constraint/offset_multiplier_constrain.hpp +include/stan/math/prim/constraint/offset_multiplier_free.hpp +include/stan/math/prim/constraint/ordered_constrain.hpp +include/stan/math/prim/constraint/ordered_free.hpp +include/stan/math/prim/constraint/positive_constrain.hpp +include/stan/math/prim/constraint/positive_free.hpp +include/stan/math/prim/constraint/positive_ordered_constrain.hpp +include/stan/math/prim/constraint/positive_ordered_free.hpp +include/stan/math/prim/constraint/prob_constrain.hpp +include/stan/math/prim/constraint/prob_free.hpp +include/stan/math/prim/constraint/simplex_constrain.hpp +include/stan/math/prim/constraint/simplex_free.hpp +include/stan/math/prim/constraint/stochastic_column_constrain.hpp +include/stan/math/prim/constraint/stochastic_column_free.hpp +include/stan/math/prim/constraint/stochastic_row_constrain.hpp +include/stan/math/prim/constraint/stochastic_row_free.hpp +include/stan/math/prim/constraint/sum_to_zero_constrain.hpp +include/stan/math/prim/constraint/sum_to_zero_free.hpp +include/stan/math/prim/constraint/ub_constrain.hpp +include/stan/math/prim/constraint/ub_free.hpp +include/stan/math/prim/constraint/unit_vector_constrain.hpp +include/stan/math/prim/constraint/unit_vector_free.hpp include/stan/math/prim/core.hpp include/stan/math/prim/core/complex_base.hpp include/stan/math/prim/core/init_threadpool_tbb.hpp @@ -641,6 +705,9 @@ include/stan/math/prim/err/check_size_match.hpp include/stan/math/prim/err/check_sorted.hpp include/stan/math/prim/err/check_square.hpp include/stan/math/prim/err/check_std_vector_index.hpp +include/stan/math/prim/err/check_stochastic_column.hpp +include/stan/math/prim/err/check_stochastic_row.hpp +include/stan/math/prim/err/check_sum_to_zero.hpp include/stan/math/prim/err/check_symmetric.hpp include/stan/math/prim/err/check_unit_vector.hpp include/stan/math/prim/err/check_vector.hpp @@ -724,11 +791,7 @@ include/stan/math/prim/fun/boost_policy.hpp include/stan/math/prim/fun/cbrt.hpp include/stan/math/prim/fun/ceil.hpp include/stan/math/prim/fun/chol2inv.hpp -include/stan/math/prim/fun/cholesky_corr_constrain.hpp -include/stan/math/prim/fun/cholesky_corr_free.hpp include/stan/math/prim/fun/cholesky_decompose.hpp -include/stan/math/prim/fun/cholesky_factor_constrain.hpp -include/stan/math/prim/fun/cholesky_factor_free.hpp include/stan/math/prim/fun/choose.hpp include/stan/math/prim/fun/col.hpp include/stan/math/prim/fun/cols.hpp @@ -738,17 +801,9 @@ include/stan/math/prim/fun/complex_schur_decompose.hpp include/stan/math/prim/fun/conj.hpp include/stan/math/prim/fun/constants.hpp include/stan/math/prim/fun/copysign.hpp -include/stan/math/prim/fun/corr_constrain.hpp -include/stan/math/prim/fun/corr_free.hpp -include/stan/math/prim/fun/corr_matrix_constrain.hpp -include/stan/math/prim/fun/corr_matrix_free.hpp include/stan/math/prim/fun/cos.hpp include/stan/math/prim/fun/cosh.hpp include/stan/math/prim/fun/cov_exp_quad.hpp -include/stan/math/prim/fun/cov_matrix_constrain.hpp -include/stan/math/prim/fun/cov_matrix_constrain_lkj.hpp -include/stan/math/prim/fun/cov_matrix_free.hpp -include/stan/math/prim/fun/cov_matrix_free_lkj.hpp include/stan/math/prim/fun/crossprod.hpp include/stan/math/prim/fun/csr_extract.hpp include/stan/math/prim/fun/csr_extract_u.hpp @@ -802,6 +857,7 @@ include/stan/math/prim/fun/fmod.hpp include/stan/math/prim/fun/gamma_p.hpp include/stan/math/prim/fun/gamma_q.hpp include/stan/math/prim/fun/generalized_inverse.hpp +include/stan/math/prim/fun/generate_laplace_options.hpp include/stan/math/prim/fun/get.hpp include/stan/math/prim/fun/get_base1.hpp include/stan/math/prim/fun/get_base1_lhs.hpp @@ -816,20 +872,18 @@ include/stan/math/prim/fun/gp_matern52_cov.hpp include/stan/math/prim/fun/gp_periodic_cov.hpp include/stan/math/prim/fun/grad_2F1.hpp include/stan/math/prim/fun/grad_F32.hpp -include/stan/math/prim/fun/grad_inc_beta.hpp include/stan/math/prim/fun/grad_pFq.hpp include/stan/math/prim/fun/grad_reg_inc_beta.hpp include/stan/math/prim/fun/grad_reg_inc_gamma.hpp include/stan/math/prim/fun/grad_reg_lower_inc_gamma.hpp include/stan/math/prim/fun/head.hpp +include/stan/math/prim/fun/hypergeometric_1F0.hpp include/stan/math/prim/fun/hypergeometric_2F1.hpp include/stan/math/prim/fun/hypergeometric_2F2.hpp include/stan/math/prim/fun/hypergeometric_3F2.hpp include/stan/math/prim/fun/hypergeometric_pFq.hpp include/stan/math/prim/fun/hypot.hpp include/stan/math/prim/fun/i_times.hpp -include/stan/math/prim/fun/identity_constrain.hpp -include/stan/math/prim/fun/identity_free.hpp include/stan/math/prim/fun/identity_matrix.hpp include/stan/math/prim/fun/if_else.hpp include/stan/math/prim/fun/imag.hpp @@ -862,8 +916,6 @@ include/stan/math/prim/fun/isinf.hpp include/stan/math/prim/fun/isnan.hpp include/stan/math/prim/fun/isnormal.hpp include/stan/math/prim/fun/lambert_w.hpp -include/stan/math/prim/fun/lb_constrain.hpp -include/stan/math/prim/fun/lb_free.hpp include/stan/math/prim/fun/lbeta.hpp include/stan/math/prim/fun/ldexp.hpp include/stan/math/prim/fun/lgamma.hpp @@ -888,6 +940,7 @@ include/stan/math/prim/fun/log_determinant_ldlt.hpp include/stan/math/prim/fun/log_determinant_spd.hpp include/stan/math/prim/fun/log_diff_exp.hpp include/stan/math/prim/fun/log_falling_factorial.hpp +include/stan/math/prim/fun/log_gamma_q_dgamma.hpp include/stan/math/prim/fun/log_inv_logit.hpp include/stan/math/prim/fun/log_inv_logit_diff.hpp include/stan/math/prim/fun/log_mix.hpp @@ -907,8 +960,6 @@ include/stan/math/prim/fun/logical_negation.hpp include/stan/math/prim/fun/logical_neq.hpp include/stan/math/prim/fun/logical_or.hpp include/stan/math/prim/fun/logit.hpp -include/stan/math/prim/fun/lub_constrain.hpp -include/stan/math/prim/fun/lub_free.hpp include/stan/math/prim/fun/make_nu.hpp include/stan/math/prim/fun/matrix_exp.hpp include/stan/math/prim/fun/matrix_exp_2x2.hpp @@ -942,8 +993,6 @@ include/stan/math/prim/fun/norm.hpp include/stan/math/prim/fun/norm1.hpp include/stan/math/prim/fun/norm2.hpp include/stan/math/prim/fun/num_elements.hpp -include/stan/math/prim/fun/offset_multiplier_constrain.hpp -include/stan/math/prim/fun/offset_multiplier_free.hpp include/stan/math/prim/fun/one_hot_array.hpp include/stan/math/prim/fun/one_hot_int_array.hpp include/stan/math/prim/fun/one_hot_row_vector.hpp @@ -952,20 +1001,12 @@ include/stan/math/prim/fun/ones_array.hpp include/stan/math/prim/fun/ones_int_array.hpp include/stan/math/prim/fun/ones_row_vector.hpp include/stan/math/prim/fun/ones_vector.hpp -include/stan/math/prim/fun/ordered_constrain.hpp -include/stan/math/prim/fun/ordered_free.hpp include/stan/math/prim/fun/owens_t.hpp include/stan/math/prim/fun/plus.hpp include/stan/math/prim/fun/poisson_binomial_log_probs.hpp include/stan/math/prim/fun/polar.hpp -include/stan/math/prim/fun/positive_constrain.hpp -include/stan/math/prim/fun/positive_free.hpp -include/stan/math/prim/fun/positive_ordered_constrain.hpp -include/stan/math/prim/fun/positive_ordered_free.hpp include/stan/math/prim/fun/pow.hpp include/stan/math/prim/fun/primitive_value.hpp -include/stan/math/prim/fun/prob_constrain.hpp -include/stan/math/prim/fun/prob_free.hpp include/stan/math/prim/fun/prod.hpp include/stan/math/prim/fun/proj.hpp include/stan/math/prim/fun/promote_elements.hpp @@ -1010,8 +1051,6 @@ include/stan/math/prim/fun/select.hpp include/stan/math/prim/fun/serializer.hpp include/stan/math/prim/fun/sign.hpp include/stan/math/prim/fun/signbit.hpp -include/stan/math/prim/fun/simplex_constrain.hpp -include/stan/math/prim/fun/simplex_free.hpp include/stan/math/prim/fun/sin.hpp include/stan/math/prim/fun/singular_values.hpp include/stan/math/prim/fun/sinh.hpp @@ -1052,6 +1091,7 @@ include/stan/math/prim/fun/to_ref.hpp include/stan/math/prim/fun/to_row_vector.hpp include/stan/math/prim/fun/to_vector.hpp include/stan/math/prim/fun/trace.hpp +include/stan/math/prim/fun/trace_dot.hpp include/stan/math/prim/fun/trace_gen_inv_quad_form_ldlt.hpp include/stan/math/prim/fun/trace_gen_quad_form.hpp include/stan/math/prim/fun/trace_inv_quad_form_ldlt.hpp @@ -1060,11 +1100,7 @@ include/stan/math/prim/fun/transpose.hpp include/stan/math/prim/fun/trigamma.hpp include/stan/math/prim/fun/trunc.hpp include/stan/math/prim/fun/typedefs.hpp -include/stan/math/prim/fun/ub_constrain.hpp -include/stan/math/prim/fun/ub_free.hpp include/stan/math/prim/fun/uniform_simplex.hpp -include/stan/math/prim/fun/unit_vector_constrain.hpp -include/stan/math/prim/fun/unit_vector_free.hpp include/stan/math/prim/fun/unitspaced_array.hpp include/stan/math/prim/fun/value_of.hpp include/stan/math/prim/fun/value_of_rec.hpp @@ -1086,6 +1122,7 @@ include/stan/math/prim/functor/apply_scalar_unary.hpp include/stan/math/prim/functor/apply_vector_unary.hpp include/stan/math/prim/functor/broadcast_array.hpp include/stan/math/prim/functor/coupled_ode_system.hpp +include/stan/math/prim/functor/filter_map.hpp include/stan/math/prim/functor/finite_diff_gradient.hpp include/stan/math/prim/functor/finite_diff_gradient_auto.hpp include/stan/math/prim/functor/for_each.hpp @@ -1094,6 +1131,9 @@ include/stan/math/prim/functor/integrate_1d.hpp include/stan/math/prim/functor/integrate_1d_adapter.hpp include/stan/math/prim/functor/integrate_ode_rk45.hpp include/stan/math/prim/functor/integrate_ode_std_vector_interface_adapter.hpp +include/stan/math/prim/functor/iter_tuple_nested.hpp +include/stan/math/prim/functor/make_holder_tuple.hpp +include/stan/math/prim/functor/map_if.hpp include/stan/math/prim/functor/map_rect.hpp include/stan/math/prim/functor/map_rect_combine.hpp include/stan/math/prim/functor/map_rect_concurrent.hpp @@ -1111,6 +1151,7 @@ include/stan/math/prim/functor/operands_and_partials.hpp include/stan/math/prim/functor/partials_propagator.hpp include/stan/math/prim/functor/reduce_sum.hpp include/stan/math/prim/functor/reduce_sum_static.hpp +include/stan/math/prim/functor/tuple_concat.hpp include/stan/math/prim/meta.hpp include/stan/math/prim/meta/StdVectorBuilder.hpp include/stan/math/prim/meta/VectorBuilder.hpp @@ -1119,11 +1160,11 @@ include/stan/math/prim/meta/ad_promotable.hpp include/stan/math/prim/meta/append_return_type.hpp include/stan/math/prim/meta/base_type.hpp include/stan/math/prim/meta/bool_constant.hpp -include/stan/math/prim/meta/child_type.hpp +include/stan/math/prim/meta/common_container_type.hpp include/stan/math/prim/meta/compiler_attributes.hpp include/stan/math/prim/meta/conjunction.hpp -include/stan/math/prim/meta/contains_fvar.hpp include/stan/math/prim/meta/contains_std_vector.hpp +include/stan/math/prim/meta/contains_tuple.hpp include/stan/math/prim/meta/disjunction.hpp include/stan/math/prim/meta/error_index.hpp include/stan/math/prim/meta/forward_as.hpp @@ -1131,6 +1172,7 @@ include/stan/math/prim/meta/holder.hpp include/stan/math/prim/meta/include_summand.hpp include/stan/math/prim/meta/index_apply.hpp include/stan/math/prim/meta/index_type.hpp +include/stan/math/prim/meta/is_all_arithmetic.hpp include/stan/math/prim/meta/is_arena_matrix.hpp include/stan/math/prim/meta/is_autodiff.hpp include/stan/math/prim/meta/is_base_pointer_convertible.hpp @@ -1147,11 +1189,14 @@ include/stan/math/prim/meta/is_eigen_dense_dynamic.hpp include/stan/math/prim/meta/is_eigen_matrix.hpp include/stan/math/prim/meta/is_eigen_matrix_base.hpp include/stan/math/prim/meta/is_eigen_sparse_base.hpp +include/stan/math/prim/meta/is_floating_point.hpp include/stan/math/prim/meta/is_fvar.hpp +include/stan/math/prim/meta/is_integral.hpp include/stan/math/prim/meta/is_kernel_expression.hpp include/stan/math/prim/meta/is_matrix.hpp include/stan/math/prim/meta/is_matrix_cl.hpp include/stan/math/prim/meta/is_plain_type.hpp +include/stan/math/prim/meta/is_real.hpp include/stan/math/prim/meta/is_rev_matrix.hpp include/stan/math/prim/meta/is_stan_scalar.hpp include/stan/math/prim/meta/is_stan_scalar_or_eigen.hpp @@ -1166,6 +1211,7 @@ include/stan/math/prim/meta/is_var_or_arithmetic.hpp include/stan/math/prim/meta/is_vari.hpp include/stan/math/prim/meta/is_vector.hpp include/stan/math/prim/meta/is_vector_like.hpp +include/stan/math/prim/meta/modify_eigen_options.hpp include/stan/math/prim/meta/partials_return_type.hpp include/stan/math/prim/meta/partials_type.hpp include/stan/math/prim/meta/plain_type.hpp @@ -1177,9 +1223,10 @@ include/stan/math/prim/meta/require_generics.hpp include/stan/math/prim/meta/require_helpers.hpp include/stan/math/prim/meta/return_type.hpp include/stan/math/prim/meta/scalar_type.hpp -include/stan/math/prim/meta/scalar_type_pre.hpp include/stan/math/prim/meta/seq_view.hpp include/stan/math/prim/meta/static_select.hpp +include/stan/math/prim/meta/tuple_element.hpp +include/stan/math/prim/meta/tuple_size.hpp include/stan/math/prim/meta/value_type.hpp include/stan/math/prim/meta/void_t.hpp include/stan/math/prim/prob.hpp @@ -1188,11 +1235,8 @@ include/stan/math/prim/prob/bernoulli_cdf.hpp include/stan/math/prim/prob/bernoulli_cdf_log.hpp include/stan/math/prim/prob/bernoulli_lccdf.hpp include/stan/math/prim/prob/bernoulli_lcdf.hpp -include/stan/math/prim/prob/bernoulli_log.hpp -include/stan/math/prim/prob/bernoulli_logit_glm_log.hpp include/stan/math/prim/prob/bernoulli_logit_glm_lpmf.hpp include/stan/math/prim/prob/bernoulli_logit_glm_rng.hpp -include/stan/math/prim/prob/bernoulli_logit_log.hpp include/stan/math/prim/prob/bernoulli_logit_lpmf.hpp include/stan/math/prim/prob/bernoulli_logit_rng.hpp include/stan/math/prim/prob/bernoulli_lpmf.hpp @@ -1202,7 +1246,6 @@ include/stan/math/prim/prob/beta_binomial_cdf.hpp include/stan/math/prim/prob/beta_binomial_cdf_log.hpp include/stan/math/prim/prob/beta_binomial_lccdf.hpp include/stan/math/prim/prob/beta_binomial_lcdf.hpp -include/stan/math/prim/prob/beta_binomial_log.hpp include/stan/math/prim/prob/beta_binomial_lpmf.hpp include/stan/math/prim/prob/beta_binomial_rng.hpp include/stan/math/prim/prob/beta_ccdf_log.hpp @@ -1210,13 +1253,16 @@ include/stan/math/prim/prob/beta_cdf.hpp include/stan/math/prim/prob/beta_cdf_log.hpp include/stan/math/prim/prob/beta_lccdf.hpp include/stan/math/prim/prob/beta_lcdf.hpp -include/stan/math/prim/prob/beta_log.hpp include/stan/math/prim/prob/beta_lpdf.hpp +include/stan/math/prim/prob/beta_neg_binomial_cdf.hpp +include/stan/math/prim/prob/beta_neg_binomial_lccdf.hpp +include/stan/math/prim/prob/beta_neg_binomial_lcdf.hpp +include/stan/math/prim/prob/beta_neg_binomial_lpmf.hpp +include/stan/math/prim/prob/beta_neg_binomial_rng.hpp include/stan/math/prim/prob/beta_proportion_ccdf_log.hpp include/stan/math/prim/prob/beta_proportion_cdf_log.hpp include/stan/math/prim/prob/beta_proportion_lccdf.hpp include/stan/math/prim/prob/beta_proportion_lcdf.hpp -include/stan/math/prim/prob/beta_proportion_log.hpp include/stan/math/prim/prob/beta_proportion_lpdf.hpp include/stan/math/prim/prob/beta_proportion_rng.hpp include/stan/math/prim/prob/beta_rng.hpp @@ -1225,15 +1271,11 @@ include/stan/math/prim/prob/binomial_cdf.hpp include/stan/math/prim/prob/binomial_cdf_log.hpp include/stan/math/prim/prob/binomial_lccdf.hpp include/stan/math/prim/prob/binomial_lcdf.hpp -include/stan/math/prim/prob/binomial_log.hpp include/stan/math/prim/prob/binomial_logit_glm_lpmf.hpp -include/stan/math/prim/prob/binomial_logit_log.hpp include/stan/math/prim/prob/binomial_logit_lpmf.hpp include/stan/math/prim/prob/binomial_lpmf.hpp include/stan/math/prim/prob/binomial_rng.hpp -include/stan/math/prim/prob/categorical_log.hpp include/stan/math/prim/prob/categorical_logit_glm_lpmf.hpp -include/stan/math/prim/prob/categorical_logit_log.hpp include/stan/math/prim/prob/categorical_logit_lpmf.hpp include/stan/math/prim/prob/categorical_logit_rng.hpp include/stan/math/prim/prob/categorical_lpmf.hpp @@ -1243,7 +1285,6 @@ include/stan/math/prim/prob/cauchy_cdf.hpp include/stan/math/prim/prob/cauchy_cdf_log.hpp include/stan/math/prim/prob/cauchy_lccdf.hpp include/stan/math/prim/prob/cauchy_lcdf.hpp -include/stan/math/prim/prob/cauchy_log.hpp include/stan/math/prim/prob/cauchy_lpdf.hpp include/stan/math/prim/prob/cauchy_rng.hpp include/stan/math/prim/prob/chi_square_ccdf_log.hpp @@ -1251,12 +1292,9 @@ include/stan/math/prim/prob/chi_square_cdf.hpp include/stan/math/prim/prob/chi_square_cdf_log.hpp include/stan/math/prim/prob/chi_square_lccdf.hpp include/stan/math/prim/prob/chi_square_lcdf.hpp -include/stan/math/prim/prob/chi_square_log.hpp include/stan/math/prim/prob/chi_square_lpdf.hpp include/stan/math/prim/prob/chi_square_rng.hpp -include/stan/math/prim/prob/dirichlet_log.hpp include/stan/math/prim/prob/dirichlet_lpdf.hpp -include/stan/math/prim/prob/dirichlet_lpmf.hpp include/stan/math/prim/prob/dirichlet_multinomial_lpmf.hpp include/stan/math/prim/prob/dirichlet_multinomial_rng.hpp include/stan/math/prim/prob/dirichlet_rng.hpp @@ -1265,7 +1303,6 @@ include/stan/math/prim/prob/discrete_range_cdf.hpp include/stan/math/prim/prob/discrete_range_cdf_log.hpp include/stan/math/prim/prob/discrete_range_lccdf.hpp include/stan/math/prim/prob/discrete_range_lcdf.hpp -include/stan/math/prim/prob/discrete_range_log.hpp include/stan/math/prim/prob/discrete_range_lpmf.hpp include/stan/math/prim/prob/discrete_range_rng.hpp include/stan/math/prim/prob/double_exponential_ccdf_log.hpp @@ -1273,7 +1310,6 @@ include/stan/math/prim/prob/double_exponential_cdf.hpp include/stan/math/prim/prob/double_exponential_cdf_log.hpp include/stan/math/prim/prob/double_exponential_lccdf.hpp include/stan/math/prim/prob/double_exponential_lcdf.hpp -include/stan/math/prim/prob/double_exponential_log.hpp include/stan/math/prim/prob/double_exponential_lpdf.hpp include/stan/math/prim/prob/double_exponential_rng.hpp include/stan/math/prim/prob/exp_mod_normal_ccdf_log.hpp @@ -1281,7 +1317,6 @@ include/stan/math/prim/prob/exp_mod_normal_cdf.hpp include/stan/math/prim/prob/exp_mod_normal_cdf_log.hpp include/stan/math/prim/prob/exp_mod_normal_lccdf.hpp include/stan/math/prim/prob/exp_mod_normal_lcdf.hpp -include/stan/math/prim/prob/exp_mod_normal_log.hpp include/stan/math/prim/prob/exp_mod_normal_lpdf.hpp include/stan/math/prim/prob/exp_mod_normal_rng.hpp include/stan/math/prim/prob/exponential_ccdf_log.hpp @@ -1289,7 +1324,6 @@ include/stan/math/prim/prob/exponential_cdf.hpp include/stan/math/prim/prob/exponential_cdf_log.hpp include/stan/math/prim/prob/exponential_lccdf.hpp include/stan/math/prim/prob/exponential_lcdf.hpp -include/stan/math/prim/prob/exponential_log.hpp include/stan/math/prim/prob/exponential_lpdf.hpp include/stan/math/prim/prob/exponential_rng.hpp include/stan/math/prim/prob/frechet_ccdf_log.hpp @@ -1297,7 +1331,6 @@ include/stan/math/prim/prob/frechet_cdf.hpp include/stan/math/prim/prob/frechet_cdf_log.hpp include/stan/math/prim/prob/frechet_lccdf.hpp include/stan/math/prim/prob/frechet_lcdf.hpp -include/stan/math/prim/prob/frechet_log.hpp include/stan/math/prim/prob/frechet_lpdf.hpp include/stan/math/prim/prob/frechet_rng.hpp include/stan/math/prim/prob/gamma_ccdf_log.hpp @@ -1305,10 +1338,8 @@ include/stan/math/prim/prob/gamma_cdf.hpp include/stan/math/prim/prob/gamma_cdf_log.hpp include/stan/math/prim/prob/gamma_lccdf.hpp include/stan/math/prim/prob/gamma_lcdf.hpp -include/stan/math/prim/prob/gamma_log.hpp include/stan/math/prim/prob/gamma_lpdf.hpp include/stan/math/prim/prob/gamma_rng.hpp -include/stan/math/prim/prob/gaussian_dlm_obs_log.hpp include/stan/math/prim/prob/gaussian_dlm_obs_lpdf.hpp include/stan/math/prim/prob/gaussian_dlm_obs_rng.hpp include/stan/math/prim/prob/gumbel_ccdf_log.hpp @@ -1316,13 +1347,11 @@ include/stan/math/prim/prob/gumbel_cdf.hpp include/stan/math/prim/prob/gumbel_cdf_log.hpp include/stan/math/prim/prob/gumbel_lccdf.hpp include/stan/math/prim/prob/gumbel_lcdf.hpp -include/stan/math/prim/prob/gumbel_log.hpp include/stan/math/prim/prob/gumbel_lpdf.hpp include/stan/math/prim/prob/gumbel_rng.hpp include/stan/math/prim/prob/hmm_hidden_state_prob.hpp include/stan/math/prim/prob/hmm_latent_rng.hpp include/stan/math/prim/prob/hmm_marginal.hpp -include/stan/math/prim/prob/hypergeometric_log.hpp include/stan/math/prim/prob/hypergeometric_lpmf.hpp include/stan/math/prim/prob/hypergeometric_rng.hpp include/stan/math/prim/prob/inv_chi_square_ccdf_log.hpp @@ -1330,7 +1359,6 @@ include/stan/math/prim/prob/inv_chi_square_cdf.hpp include/stan/math/prim/prob/inv_chi_square_cdf_log.hpp include/stan/math/prim/prob/inv_chi_square_lccdf.hpp include/stan/math/prim/prob/inv_chi_square_lcdf.hpp -include/stan/math/prim/prob/inv_chi_square_log.hpp include/stan/math/prim/prob/inv_chi_square_lpdf.hpp include/stan/math/prim/prob/inv_chi_square_rng.hpp include/stan/math/prim/prob/inv_gamma_ccdf_log.hpp @@ -1338,32 +1366,25 @@ include/stan/math/prim/prob/inv_gamma_cdf.hpp include/stan/math/prim/prob/inv_gamma_cdf_log.hpp include/stan/math/prim/prob/inv_gamma_lccdf.hpp include/stan/math/prim/prob/inv_gamma_lcdf.hpp -include/stan/math/prim/prob/inv_gamma_log.hpp include/stan/math/prim/prob/inv_gamma_lpdf.hpp include/stan/math/prim/prob/inv_gamma_rng.hpp include/stan/math/prim/prob/inv_wishart_cholesky_lpdf.hpp include/stan/math/prim/prob/inv_wishart_cholesky_rng.hpp -include/stan/math/prim/prob/inv_wishart_log.hpp include/stan/math/prim/prob/inv_wishart_lpdf.hpp include/stan/math/prim/prob/inv_wishart_rng.hpp -include/stan/math/prim/prob/lkj_corr_cholesky_log.hpp include/stan/math/prim/prob/lkj_corr_cholesky_lpdf.hpp include/stan/math/prim/prob/lkj_corr_cholesky_rng.hpp -include/stan/math/prim/prob/lkj_corr_log.hpp include/stan/math/prim/prob/lkj_corr_lpdf.hpp include/stan/math/prim/prob/lkj_corr_rng.hpp -include/stan/math/prim/prob/lkj_cov_log.hpp include/stan/math/prim/prob/lkj_cov_lpdf.hpp include/stan/math/prim/prob/logistic_ccdf_log.hpp include/stan/math/prim/prob/logistic_cdf.hpp include/stan/math/prim/prob/logistic_cdf_log.hpp include/stan/math/prim/prob/logistic_lccdf.hpp include/stan/math/prim/prob/logistic_lcdf.hpp -include/stan/math/prim/prob/logistic_log.hpp include/stan/math/prim/prob/logistic_lpdf.hpp include/stan/math/prim/prob/logistic_rng.hpp include/stan/math/prim/prob/loglogistic_cdf.hpp -include/stan/math/prim/prob/loglogistic_log.hpp include/stan/math/prim/prob/loglogistic_lpdf.hpp include/stan/math/prim/prob/loglogistic_rng.hpp include/stan/math/prim/prob/lognormal_ccdf_log.hpp @@ -1371,32 +1392,22 @@ include/stan/math/prim/prob/lognormal_cdf.hpp include/stan/math/prim/prob/lognormal_cdf_log.hpp include/stan/math/prim/prob/lognormal_lccdf.hpp include/stan/math/prim/prob/lognormal_lcdf.hpp -include/stan/math/prim/prob/lognormal_log.hpp include/stan/math/prim/prob/lognormal_lpdf.hpp include/stan/math/prim/prob/lognormal_rng.hpp -include/stan/math/prim/prob/matrix_normal_prec_log.hpp include/stan/math/prim/prob/matrix_normal_prec_lpdf.hpp include/stan/math/prim/prob/matrix_normal_prec_rng.hpp -include/stan/math/prim/prob/multi_gp_cholesky_log.hpp include/stan/math/prim/prob/multi_gp_cholesky_lpdf.hpp -include/stan/math/prim/prob/multi_gp_log.hpp include/stan/math/prim/prob/multi_gp_lpdf.hpp -include/stan/math/prim/prob/multi_normal_cholesky_log.hpp include/stan/math/prim/prob/multi_normal_cholesky_lpdf.hpp include/stan/math/prim/prob/multi_normal_cholesky_rng.hpp -include/stan/math/prim/prob/multi_normal_log.hpp include/stan/math/prim/prob/multi_normal_lpdf.hpp -include/stan/math/prim/prob/multi_normal_prec_log.hpp include/stan/math/prim/prob/multi_normal_prec_lpdf.hpp include/stan/math/prim/prob/multi_normal_prec_rng.hpp include/stan/math/prim/prob/multi_normal_rng.hpp include/stan/math/prim/prob/multi_student_t_cholesky_lpdf.hpp include/stan/math/prim/prob/multi_student_t_cholesky_rng.hpp -include/stan/math/prim/prob/multi_student_t_log.hpp include/stan/math/prim/prob/multi_student_t_lpdf.hpp include/stan/math/prim/prob/multi_student_t_rng.hpp -include/stan/math/prim/prob/multinomial_log.hpp -include/stan/math/prim/prob/multinomial_logit_log.hpp include/stan/math/prim/prob/multinomial_logit_lpmf.hpp include/stan/math/prim/prob/multinomial_logit_rng.hpp include/stan/math/prim/prob/multinomial_lpmf.hpp @@ -1406,10 +1417,7 @@ include/stan/math/prim/prob/neg_binomial_2_cdf.hpp include/stan/math/prim/prob/neg_binomial_2_cdf_log.hpp include/stan/math/prim/prob/neg_binomial_2_lccdf.hpp include/stan/math/prim/prob/neg_binomial_2_lcdf.hpp -include/stan/math/prim/prob/neg_binomial_2_log.hpp -include/stan/math/prim/prob/neg_binomial_2_log_glm_log.hpp include/stan/math/prim/prob/neg_binomial_2_log_glm_lpmf.hpp -include/stan/math/prim/prob/neg_binomial_2_log_log.hpp include/stan/math/prim/prob/neg_binomial_2_log_lpmf.hpp include/stan/math/prim/prob/neg_binomial_2_log_rng.hpp include/stan/math/prim/prob/neg_binomial_2_lpmf.hpp @@ -1419,26 +1427,20 @@ include/stan/math/prim/prob/neg_binomial_cdf.hpp include/stan/math/prim/prob/neg_binomial_cdf_log.hpp include/stan/math/prim/prob/neg_binomial_lccdf.hpp include/stan/math/prim/prob/neg_binomial_lcdf.hpp -include/stan/math/prim/prob/neg_binomial_log.hpp include/stan/math/prim/prob/neg_binomial_lpmf.hpp include/stan/math/prim/prob/neg_binomial_rng.hpp include/stan/math/prim/prob/normal_ccdf_log.hpp include/stan/math/prim/prob/normal_cdf.hpp include/stan/math/prim/prob/normal_cdf_log.hpp -include/stan/math/prim/prob/normal_id_glm_log.hpp include/stan/math/prim/prob/normal_id_glm_lpdf.hpp include/stan/math/prim/prob/normal_lccdf.hpp include/stan/math/prim/prob/normal_lcdf.hpp -include/stan/math/prim/prob/normal_log.hpp include/stan/math/prim/prob/normal_lpdf.hpp include/stan/math/prim/prob/normal_rng.hpp -include/stan/math/prim/prob/normal_sufficient_log.hpp include/stan/math/prim/prob/normal_sufficient_lpdf.hpp include/stan/math/prim/prob/ordered_logistic_glm_lpmf.hpp -include/stan/math/prim/prob/ordered_logistic_log.hpp include/stan/math/prim/prob/ordered_logistic_lpmf.hpp include/stan/math/prim/prob/ordered_logistic_rng.hpp -include/stan/math/prim/prob/ordered_probit_log.hpp include/stan/math/prim/prob/ordered_probit_lpmf.hpp include/stan/math/prim/prob/ordered_probit_rng.hpp include/stan/math/prim/prob/pareto_ccdf_log.hpp @@ -1446,7 +1448,6 @@ include/stan/math/prim/prob/pareto_cdf.hpp include/stan/math/prim/prob/pareto_cdf_log.hpp include/stan/math/prim/prob/pareto_lccdf.hpp include/stan/math/prim/prob/pareto_lcdf.hpp -include/stan/math/prim/prob/pareto_log.hpp include/stan/math/prim/prob/pareto_lpdf.hpp include/stan/math/prim/prob/pareto_rng.hpp include/stan/math/prim/prob/pareto_type_2_ccdf_log.hpp @@ -1454,7 +1455,6 @@ include/stan/math/prim/prob/pareto_type_2_cdf.hpp include/stan/math/prim/prob/pareto_type_2_cdf_log.hpp include/stan/math/prim/prob/pareto_type_2_lccdf.hpp include/stan/math/prim/prob/pareto_type_2_lcdf.hpp -include/stan/math/prim/prob/pareto_type_2_log.hpp include/stan/math/prim/prob/pareto_type_2_lpdf.hpp include/stan/math/prim/prob/pareto_type_2_rng.hpp include/stan/math/prim/prob/poisson_binomial_ccdf_log.hpp @@ -1462,7 +1462,6 @@ include/stan/math/prim/prob/poisson_binomial_cdf.hpp include/stan/math/prim/prob/poisson_binomial_cdf_log.hpp include/stan/math/prim/prob/poisson_binomial_lccdf.hpp include/stan/math/prim/prob/poisson_binomial_lcdf.hpp -include/stan/math/prim/prob/poisson_binomial_log.hpp include/stan/math/prim/prob/poisson_binomial_lpmf.hpp include/stan/math/prim/prob/poisson_binomial_rng.hpp include/stan/math/prim/prob/poisson_ccdf_log.hpp @@ -1470,10 +1469,7 @@ include/stan/math/prim/prob/poisson_cdf.hpp include/stan/math/prim/prob/poisson_cdf_log.hpp include/stan/math/prim/prob/poisson_lccdf.hpp include/stan/math/prim/prob/poisson_lcdf.hpp -include/stan/math/prim/prob/poisson_log.hpp -include/stan/math/prim/prob/poisson_log_glm_log.hpp include/stan/math/prim/prob/poisson_log_glm_lpmf.hpp -include/stan/math/prim/prob/poisson_log_log.hpp include/stan/math/prim/prob/poisson_log_lpmf.hpp include/stan/math/prim/prob/poisson_log_rng.hpp include/stan/math/prim/prob/poisson_lpmf.hpp @@ -1483,7 +1479,6 @@ include/stan/math/prim/prob/rayleigh_cdf.hpp include/stan/math/prim/prob/rayleigh_cdf_log.hpp include/stan/math/prim/prob/rayleigh_lccdf.hpp include/stan/math/prim/prob/rayleigh_lcdf.hpp -include/stan/math/prim/prob/rayleigh_log.hpp include/stan/math/prim/prob/rayleigh_lpdf.hpp include/stan/math/prim/prob/rayleigh_rng.hpp include/stan/math/prim/prob/scaled_inv_chi_square_ccdf_log.hpp @@ -1491,7 +1486,6 @@ include/stan/math/prim/prob/scaled_inv_chi_square_cdf.hpp include/stan/math/prim/prob/scaled_inv_chi_square_cdf_log.hpp include/stan/math/prim/prob/scaled_inv_chi_square_lccdf.hpp include/stan/math/prim/prob/scaled_inv_chi_square_lcdf.hpp -include/stan/math/prim/prob/scaled_inv_chi_square_log.hpp include/stan/math/prim/prob/scaled_inv_chi_square_lpdf.hpp include/stan/math/prim/prob/scaled_inv_chi_square_rng.hpp include/stan/math/prim/prob/skew_double_exponential_ccdf_log.hpp @@ -1499,7 +1493,6 @@ include/stan/math/prim/prob/skew_double_exponential_cdf.hpp include/stan/math/prim/prob/skew_double_exponential_cdf_log.hpp include/stan/math/prim/prob/skew_double_exponential_lccdf.hpp include/stan/math/prim/prob/skew_double_exponential_lcdf.hpp -include/stan/math/prim/prob/skew_double_exponential_log.hpp include/stan/math/prim/prob/skew_double_exponential_lpdf.hpp include/stan/math/prim/prob/skew_double_exponential_rng.hpp include/stan/math/prim/prob/skew_normal_ccdf_log.hpp @@ -1507,7 +1500,6 @@ include/stan/math/prim/prob/skew_normal_cdf.hpp include/stan/math/prim/prob/skew_normal_cdf_log.hpp include/stan/math/prim/prob/skew_normal_lccdf.hpp include/stan/math/prim/prob/skew_normal_lcdf.hpp -include/stan/math/prim/prob/skew_normal_log.hpp include/stan/math/prim/prob/skew_normal_lpdf.hpp include/stan/math/prim/prob/skew_normal_rng.hpp include/stan/math/prim/prob/std_normal_ccdf_log.hpp @@ -1515,7 +1507,6 @@ include/stan/math/prim/prob/std_normal_cdf.hpp include/stan/math/prim/prob/std_normal_cdf_log.hpp include/stan/math/prim/prob/std_normal_lccdf.hpp include/stan/math/prim/prob/std_normal_lcdf.hpp -include/stan/math/prim/prob/std_normal_log.hpp include/stan/math/prim/prob/std_normal_log_qf.hpp include/stan/math/prim/prob/std_normal_lpdf.hpp include/stan/math/prim/prob/std_normal_rng.hpp @@ -1524,15 +1515,14 @@ include/stan/math/prim/prob/student_t_cdf.hpp include/stan/math/prim/prob/student_t_cdf_log.hpp include/stan/math/prim/prob/student_t_lccdf.hpp include/stan/math/prim/prob/student_t_lcdf.hpp -include/stan/math/prim/prob/student_t_log.hpp include/stan/math/prim/prob/student_t_lpdf.hpp +include/stan/math/prim/prob/student_t_qf.hpp include/stan/math/prim/prob/student_t_rng.hpp include/stan/math/prim/prob/uniform_ccdf_log.hpp include/stan/math/prim/prob/uniform_cdf.hpp include/stan/math/prim/prob/uniform_cdf_log.hpp include/stan/math/prim/prob/uniform_lccdf.hpp include/stan/math/prim/prob/uniform_lcdf.hpp -include/stan/math/prim/prob/uniform_log.hpp include/stan/math/prim/prob/uniform_lpdf.hpp include/stan/math/prim/prob/uniform_rng.hpp include/stan/math/prim/prob/von_mises_ccdf_log.hpp @@ -1540,7 +1530,6 @@ include/stan/math/prim/prob/von_mises_cdf.hpp include/stan/math/prim/prob/von_mises_cdf_log.hpp include/stan/math/prim/prob/von_mises_lccdf.hpp include/stan/math/prim/prob/von_mises_lcdf.hpp -include/stan/math/prim/prob/von_mises_log.hpp include/stan/math/prim/prob/von_mises_lpdf.hpp include/stan/math/prim/prob/von_mises_rng.hpp include/stan/math/prim/prob/weibull_ccdf_log.hpp @@ -1548,17 +1537,43 @@ include/stan/math/prim/prob/weibull_cdf.hpp include/stan/math/prim/prob/weibull_cdf_log.hpp include/stan/math/prim/prob/weibull_lccdf.hpp include/stan/math/prim/prob/weibull_lcdf.hpp -include/stan/math/prim/prob/weibull_log.hpp include/stan/math/prim/prob/weibull_lpdf.hpp include/stan/math/prim/prob/weibull_rng.hpp -include/stan/math/prim/prob/wiener_log.hpp +include/stan/math/prim/prob/wiener4_lccdf_unnorm.hpp +include/stan/math/prim/prob/wiener4_lcdf_unnorm.hpp +include/stan/math/prim/prob/wiener5_lpdf.hpp +include/stan/math/prim/prob/wiener_full_lccdf_unnorm.hpp +include/stan/math/prim/prob/wiener_full_lcdf_unnorm.hpp +include/stan/math/prim/prob/wiener_full_lpdf.hpp include/stan/math/prim/prob/wiener_lpdf.hpp include/stan/math/prim/prob/wishart_cholesky_lpdf.hpp include/stan/math/prim/prob/wishart_cholesky_rng.hpp -include/stan/math/prim/prob/wishart_log.hpp include/stan/math/prim/prob/wishart_lpdf.hpp include/stan/math/prim/prob/wishart_rng.hpp +include/stan/math/prim/prob/yule_simon_cdf.hpp +include/stan/math/prim/prob/yule_simon_lccdf.hpp +include/stan/math/prim/prob/yule_simon_lcdf.hpp +include/stan/math/prim/prob/yule_simon_lpmf.hpp +include/stan/math/prim/prob/yule_simon_rng.hpp include/stan/math/rev.hpp +include/stan/math/rev/constraint.hpp +include/stan/math/rev/constraint/cholesky_corr_constrain.hpp +include/stan/math/rev/constraint/cholesky_factor_constrain.hpp +include/stan/math/rev/constraint/corr_matrix_constrain.hpp +include/stan/math/rev/constraint/cov_matrix_constrain.hpp +include/stan/math/rev/constraint/cov_matrix_constrain_lkj.hpp +include/stan/math/rev/constraint/identity_constrain.hpp +include/stan/math/rev/constraint/identity_free.hpp +include/stan/math/rev/constraint/lb_constrain.hpp +include/stan/math/rev/constraint/lub_constrain.hpp +include/stan/math/rev/constraint/ordered_constrain.hpp +include/stan/math/rev/constraint/positive_ordered_constrain.hpp +include/stan/math/rev/constraint/simplex_constrain.hpp +include/stan/math/rev/constraint/stochastic_column_constrain.hpp +include/stan/math/rev/constraint/stochastic_row_constrain.hpp +include/stan/math/rev/constraint/sum_to_zero_constrain.hpp +include/stan/math/rev/constraint/ub_constrain.hpp +include/stan/math/rev/constraint/unit_vector_constrain.hpp include/stan/math/rev/core.hpp include/stan/math/rev/core/Eigen_NumTraits.hpp include/stan/math/rev/core/accumulate_adjoints.hpp @@ -1570,6 +1585,7 @@ include/stan/math/rev/core/callback_vari.hpp include/stan/math/rev/core/chainable_alloc.hpp include/stan/math/rev/core/chainable_object.hpp include/stan/math/rev/core/chainablestack.hpp +include/stan/math/rev/core/collect_adjoints.hpp include/stan/math/rev/core/count_vars.hpp include/stan/math/rev/core/ddv_vari.hpp include/stan/math/rev/core/deep_copy_vars.hpp @@ -1577,9 +1593,11 @@ include/stan/math/rev/core/dv_vari.hpp include/stan/math/rev/core/dvd_vari.hpp include/stan/math/rev/core/dvv_vari.hpp include/stan/math/rev/core/empty_nested.hpp +include/stan/math/rev/core/filter_var_scalar_types.hpp include/stan/math/rev/core/gevv_vvv_vari.hpp include/stan/math/rev/core/grad.hpp include/stan/math/rev/core/init_chainablestack.hpp +include/stan/math/rev/core/make_zeroed_arena.hpp include/stan/math/rev/core/matrix_vari.hpp include/stan/math/rev/core/nested_rev_autodiff.hpp include/stan/math/rev/core/nested_size.hpp @@ -1663,18 +1681,13 @@ include/stan/math/rev/fun/beta.hpp include/stan/math/rev/fun/binary_log_loss.hpp include/stan/math/rev/fun/cbrt.hpp include/stan/math/rev/fun/ceil.hpp -include/stan/math/rev/fun/cholesky_corr_constrain.hpp include/stan/math/rev/fun/cholesky_decompose.hpp -include/stan/math/rev/fun/cholesky_factor_constrain.hpp include/stan/math/rev/fun/columns_dot_product.hpp include/stan/math/rev/fun/columns_dot_self.hpp include/stan/math/rev/fun/conj.hpp *** 93 LINES SKIPPED ***home | help
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