Date: Sun, 11 Aug 2019 16:49:24 +0000 (UTC) From: Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r508637 - head/biology/p5-BioPerl Message-ID: <201908111649.x7BGnOmF021982@repo.freebsd.org>
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Author: sunpoet Date: Sun Aug 11 16:49:24 2019 New Revision: 508637 URL: https://svnweb.freebsd.org/changeset/ports/508637 Log: Update to 1.007005 (1.7.5) - Fix DISTNAME - Bump PORTREVISION for package change Changes: https://metacpan.org/changes/distribution/BioPerl Modified: head/biology/p5-BioPerl/Makefile head/biology/p5-BioPerl/distinfo head/biology/p5-BioPerl/pkg-plist Modified: head/biology/p5-BioPerl/Makefile ============================================================================== --- head/biology/p5-BioPerl/Makefile Sun Aug 11 16:47:44 2019 (r508636) +++ head/biology/p5-BioPerl/Makefile Sun Aug 11 16:49:24 2019 (r508637) @@ -3,11 +3,12 @@ PORTNAME= BioPerl PORTVERSION= 1.007005 +PORTREVISION= 1 CATEGORIES= biology perl5 MASTER_SITES= CPAN MASTER_SITE_SUBDIR= CPAN:CDRAUG PKGNAMEPREFIX= p5- -DISTNAME= ${PORTNAME}-1.7.4 +DISTNAME= ${PORTNAME}-${PORTVERSION:R}${PORTVERSION:E:S|00|.|g} MAINTAINER= sunpoet@FreeBSD.org COMMENT= Collection of Perl modules for bioinformatics Modified: head/biology/p5-BioPerl/distinfo ============================================================================== --- head/biology/p5-BioPerl/distinfo Sun Aug 11 16:47:44 2019 (r508636) +++ head/biology/p5-BioPerl/distinfo Sun Aug 11 16:49:24 2019 (r508637) @@ -1,3 +1,3 @@ -TIMESTAMP = 1550843244 -SHA256 (BioPerl-1.7.4.tar.gz) = 5a074947bba299cdb47cbf1c66689502db02c022fc138459e3393da45d7c707b -SIZE (BioPerl-1.7.4.tar.gz) = 7642013 +TIMESTAMP = 1565523237 +SHA256 (BioPerl-1.7.5.tar.gz) = 4a96472004e35e11eafd1fa3b3966f1d18622de3afde3e2fa6765a2dbedb3a0a +SIZE (BioPerl-1.7.5.tar.gz) = 7512326 Modified: head/biology/p5-BioPerl/pkg-plist ============================================================================== --- head/biology/p5-BioPerl/pkg-plist Sun Aug 11 16:47:44 2019 (r508636) +++ head/biology/p5-BioPerl/pkg-plist Sun Aug 11 16:49:24 2019 (r508637) @@ -329,7 +329,6 @@ bin/bp_unflatten_seq %%SITE_PERL%%/Bio/Seq/SeqBuilder.pm %%SITE_PERL%%/Bio/Seq/SeqFactory.pm %%SITE_PERL%%/Bio/Seq/SeqFastaSpeedFactory.pm -%%SITE_PERL%%/Bio/Seq/SeqWithQuality.pm %%SITE_PERL%%/Bio/Seq/SequenceTrace.pm %%SITE_PERL%%/Bio/Seq/SimulatedRead.pm %%SITE_PERL%%/Bio/Seq/TraceI.pm @@ -412,13 +411,6 @@ bin/bp_unflatten_seq %%SITE_PERL%%/Bio/SimpleAlign.pm %%SITE_PERL%%/Bio/SimpleAnalysisI.pm %%SITE_PERL%%/Bio/Species.pm -%%SITE_PERL%%/Bio/Symbol/Alphabet.pm -%%SITE_PERL%%/Bio/Symbol/AlphabetI.pm -%%SITE_PERL%%/Bio/Symbol/DNAAlphabet.pm -%%SITE_PERL%%/Bio/Symbol/ProteinAlphabet.pm -%%SITE_PERL%%/Bio/Symbol/README.Symbol -%%SITE_PERL%%/Bio/Symbol/Symbol.pm -%%SITE_PERL%%/Bio/Symbol/SymbolI.pm %%SITE_PERL%%/Bio/Taxon.pm %%SITE_PERL%%/Bio/Tools/Alignment/Consed.pm %%SITE_PERL%%/Bio/Tools/Alignment/Trim.pm @@ -474,7 +466,6 @@ bin/bp_unflatten_seq %%SITE_PERL%%/Bio/Tools/Run/GenericParameters.pm %%SITE_PERL%%/Bio/Tools/Run/ParametersI.pm %%SITE_PERL%%/Bio/Tools/Run/Phylo/PhyloBase.pm -%%SITE_PERL%%/Bio/Tools/Run/README %%SITE_PERL%%/Bio/Tools/Run/WrapperBase.pm %%SITE_PERL%%/Bio/Tools/Run/WrapperBase/CommandExts.pm %%SITE_PERL%%/Bio/Tools/Seg.pm @@ -852,7 +843,6 @@ bin/bp_unflatten_seq %%PERL5_MAN3%%/Bio::Seq::SeqBuilder.3.gz %%PERL5_MAN3%%/Bio::Seq::SeqFactory.3.gz %%PERL5_MAN3%%/Bio::Seq::SeqFastaSpeedFactory.3.gz -%%PERL5_MAN3%%/Bio::Seq::SeqWithQuality.3.gz %%PERL5_MAN3%%/Bio::Seq::SequenceTrace.3.gz %%PERL5_MAN3%%/Bio::Seq::SimulatedRead.3.gz %%PERL5_MAN3%%/Bio::Seq::TraceI.3.gz @@ -935,12 +925,6 @@ bin/bp_unflatten_seq %%PERL5_MAN3%%/Bio::SimpleAlign.3.gz %%PERL5_MAN3%%/Bio::SimpleAnalysisI.3.gz %%PERL5_MAN3%%/Bio::Species.3.gz -%%PERL5_MAN3%%/Bio::Symbol::Alphabet.3.gz -%%PERL5_MAN3%%/Bio::Symbol::AlphabetI.3.gz -%%PERL5_MAN3%%/Bio::Symbol::DNAAlphabet.3.gz -%%PERL5_MAN3%%/Bio::Symbol::ProteinAlphabet.3.gz -%%PERL5_MAN3%%/Bio::Symbol::Symbol.3.gz -%%PERL5_MAN3%%/Bio::Symbol::SymbolI.3.gz %%PERL5_MAN3%%/Bio::Taxon.3.gz %%PERL5_MAN3%%/Bio::Tools::Alignment::Consed.3.gz %%PERL5_MAN3%%/Bio::Tools::Alignment::Trim.3.gz
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