Skip site navigation (1)Skip section navigation (2)
Date:      Thu, 05 Mar 2026 12:44:16 +0000
From:      Jason W. Bacon <jwb@FreeBSD.org>
To:        ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org
Subject:   git: 746a50b935da - main - biology/atac-seq: Update to 0.3.0
Message-ID:  <69a97aa0.47eb2.212ca145@gitrepo.freebsd.org>

index | next in thread | raw e-mail

The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=746a50b935da1b888b10c57ee0789a39903814ce

commit 746a50b935da1b888b10c57ee0789a39903814ce
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2026-03-05 12:43:27 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2026-03-05 12:43:27 +0000

    biology/atac-seq: Update to 0.3.0
    
    Add biology/fasda-utils to metaport depends
---
 biology/atac-seq/Makefile | 9 ++++++---
 biology/atac-seq/distinfo | 2 +-
 2 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/biology/atac-seq/Makefile b/biology/atac-seq/Makefile
index d24e8007fcf1..a35f746a21ec 100644
--- a/biology/atac-seq/Makefile
+++ b/biology/atac-seq/Makefile
@@ -1,6 +1,8 @@
 PORTNAME=	atac-seq
-DISTVERSION=	0.2.0
-PORTREVISION=	1
+# Update major version only if the metaport is overhauled
+# Update minor version when adding or removing dependencies
+# Update revision for all other changes
+DISTVERSION=	0.3.0
 CATEGORIES=	biology python
 MASTER_SITES=	# empty
 
@@ -20,6 +22,7 @@ RUN_DEPENDS=	sra-tools>0:biology/sra-tools \
 		samtools>0:biology/samtools \
 		${PYTHON_PKGNAMEPREFIX}macs2>0:biology/py-macs2@${PY_FLAVOR} \
 		fasda>0:biology/fasda \
+		fasda-utils>0:biology/fasda-utils \
 		peak-classifier>0:biology/peak-classifier \
 		webbrowser>0:www/webbrowser \
 		curl>0:ftp/curl
@@ -28,7 +31,7 @@ USES=		metaport python
 
 .include <bsd.port.options.mk>
 
-.if ${OPSYS} != FreeBSD
+.if ${OPSYS} != FreeBSD || ${OSVERSION} >= 1302509
 RUN_DEPENDS+=	${PYTHON_PKGNAMEPREFIX}MACS3>0:biology/py-macs3@${PY_FLAVOR}
 .endif
 
diff --git a/biology/atac-seq/distinfo b/biology/atac-seq/distinfo
index 968e68a80fb0..7ab5dc3a527d 100644
--- a/biology/atac-seq/distinfo
+++ b/biology/atac-seq/distinfo
@@ -1 +1 @@
-TIMESTAMP = 1704902712
+TIMESTAMP = 1772714589


home | help

Want to link to this message? Use this
URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?69a97aa0.47eb2.212ca145>