Date: Thu, 25 Jan 2007 09:25:47 -0600 From: Rick Voland <rpvoland@facstaff.wisc.edu> To: vittorio <vdemart1@tin.it> Cc: freebsd-ports@freebsd.org Subject: Re: math/R eats up all. Message-ID: <45B8CBFB.6090001@facstaff.wisc.edu> In-Reply-To: <200701241944.53346.vdemart1@tin.it> References: <20070117.180355.02238085.chat95@mac.com> <20070124.094023.04505493.chat95@mac.com> <20070124.103041.34613013.chat95@mac.com> <200701241944.53346.vdemart1@tin.it>
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Can anyone else confirm a problem or lack of problem building math/R with the build option for math/atlas using the new gcc42 ? Last night, I rebuilt math/blas and math/atlas successfully using their default settings. I have had no problem with them. Then, I built math/R selecting all the options in the options window (letterpaper, dvi manuals, atlas). I know from previous attempts that math/R builds successfully on this machine using the latest gcc42 with all options except when I select math/atlas. When I delete /var/db/ports/R/options (to reset the options), math/atlas is not automatically selected. math/R built up to the point of starting lapack stuff (right after graphics devices), and then stops building, but R continues to use 100% CPU cycles. I allowed it go for two hours with no more progress. R (without atlas) would complete in maybe 20 minutes. The computer remained responsive, but I had to kill R. math/R built successfully with math/atlas on this computer before the change to gcc42. In my make.conf, I identify the CPU as Pentium-M, but I have no optimization settings in make.conf. Thanks, Rick Voland rpvoland@facstaff.wisc.edu vittorio wrote: > I helped the mantainer to update R to both 2.4.0 and to 2.4.1 (ports/107638, > still waiting to be committed, long overdue). > > I can't understand the point! > On a pentium 4 notebook I hadn't the slightest problem in compiling the latest > R, atlas, blas and lapack. > As a matter of fact R requires 'blas' as a dependency as well as 'atlas'. So > if you compile/update atlas (i did it yesterday!) by default blas should be > compiled and installed. > > I suggest to install the following packages with the default configuration in > this order: > 1) blas > 2) atlas > 3) R > > Let me know.... > > Ciao > Vittorio > > > Alle 01:30, mercoledì 24 gennaio 2007, NAKATA Maho ha scritto: >> Hi, >> >> I recieved some message that we cannot build math/R. >> >> If one use ATLAS instead of BLAS/LAPACK, build of math/R stops at: >>> mkdir ../../../../library/grDevices/libs >> and then hangs with 100% CPU usage. >> >> I don't know how I fix it sorry. >> -- NAKATA, Maho (maho@FreeBSD.org) >> _______________________________________________ >> freebsd-ports@freebsd.org mailing list >> http://lists.freebsd.org/mailman/listinfo/freebsd-ports >> To unsubscribe, send any mail to "freebsd-ports-unsubscribe@freebsd.org" > _______________________________________________ > freebsd-ports@freebsd.org mailing list > http://lists.freebsd.org/mailman/listinfo/freebsd-ports > To unsubscribe, send any mail to "freebsd-ports-unsubscribe@freebsd.org" > -- Rick Voland rpvoland@facstaff.wisc.edu
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