Date: Thu, 31 Oct 2024 19:28:18 GMT From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 0651e2054aa6 - main - biology/gatk: Update tests stats; Add dependency Message-ID: <202410311928.49VJSI5A052718@gitrepo.freebsd.org>
index | next in thread | raw e-mail
The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=0651e2054aa68513a8c174a4b7f7ec5606557ce9 commit 0651e2054aa68513a8c174a4b7f7ec5606557ce9 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2024-10-31 19:27:12 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2024-10-31 19:28:13 +0000 biology/gatk: Update tests stats; Add dependency --- biology/gatk/Makefile | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/biology/gatk/Makefile b/biology/gatk/Makefile index f442f7798f45..675650e5ac59 100644 --- a/biology/gatk/Makefile +++ b/biology/gatk/Makefile @@ -1,5 +1,6 @@ PORTNAME= gatk DISTVERSION= 4.6.1.0 +PORTREVISION= 1 CATEGORIES= biology java EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} @@ -12,7 +13,8 @@ LICENSE_FILE= ${WRKSRC}/LICENSE.TXT BUILD_DEPENDS= gradle:devel/gradle RUN_DEPENDS= ${LOCALBASE}/lib/libfml.so:biology/fermi-lite \ - gkl>0:biology/gkl + gkl>0:biology/gkl \ + mummer>0:biology/mummer USES= gettext-runtime python:test USE_JAVA= yes @@ -116,7 +118,7 @@ do-test: # tests require WITH_LARGE_FILES=ON, and they use a lot of disk space @cd ${WRKSRC} && \ ${SETENV} ${TEST_ENV} gradle -DLIBBWA_PATH=${PREFIX}/lib/libfml.so test -# tests results as of version 4.6.0.0_1: 288433 tests completed, 301 failed, 37 skipped, see https://github.com/broadinstitute/gatk/issues/8940 +# tests results as of version 4.6.1.0: 288552 tests, 301 failures, 37 ignored, 1h55m5.63s duration, 99% successful, see https://github.com/broadinstitute/gatk/issues/8940 # see https://github.com/broadinstitute/gatk/issues/8939: Tests fail to find libgkl libraries in /usr/local/lib .include <bsd.port.mk>home | help
Want to link to this message? Use this
URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?202410311928.49VJSI5A052718>