Date: Wed, 24 Jan 2024 08:26:11 GMT From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 0415d9fd1819 - main - math/stanmath: update 4.7.0 =?utf-8?Q?=E2=86=92?= 4.8.1 Message-ID: <202401240826.40O8QBCG060695@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=0415d9fd18195eae46ab89e177af87809c6c0408 commit 0415d9fd18195eae46ab89e177af87809c6c0408 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2024-01-24 07:56:53 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2024-01-24 08:26:00 +0000 math/stanmath: update 4.7.0 → 4.8.1 Reported by: portscout --- math/stanmath/Makefile | 8 +++++--- math/stanmath/distinfo | 6 +++--- math/stanmath/pkg-plist | 9 +++++++++ 3 files changed, 17 insertions(+), 6 deletions(-) diff --git a/math/stanmath/Makefile b/math/stanmath/Makefile index 32f883f294a6..49abb795e4dd 100644 --- a/math/stanmath/Makefile +++ b/math/stanmath/Makefile @@ -1,6 +1,6 @@ PORTNAME= stanmath DISTVERSIONPREFIX= v -DISTVERSION= 4.7.0 +DISTVERSION= 4.8.1 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org @@ -14,7 +14,7 @@ RUN_DEPENDS= ${LOCALBASE}/include/boost/math/constants/constants.hpp:devel/boost ${LOCALBASE}/include/tbb/task_arena.h:devel/onetbb # compiler define -DTBB_INTERFACE_NEW chooses oneTBB as opposed to TBB TEST_DEPENDS= gmake:devel/gmake -USES= eigen:3,run python:test shebangfix +USES= eigen:3,run gmake python:test shebangfix USE_GITHUB= yes GH_ACCOUNT= stan-dev @@ -24,13 +24,15 @@ SHEBANG_FILES= runTests.py MAKE_ENV= TBB_LIB="${LOCALBASE}/lib" +BINARY_ALIAS= make=${GMAKE} + NO_BUILD= yes NO_ARCH= yes do-install: @cd ${WRKSRC} && ${COPYTREE_SHARE} stan ${STAGEDIR}${PREFIX}/include -do-test: # fails to compile: https://github.com/stan-dev/math/issues/2571 +do-test: # fails to link with TBB, see https://github.com/stan-dev/math/issues/2851 @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ./runTests.py test/unit test/prob .include <bsd.port.mk> diff --git a/math/stanmath/distinfo b/math/stanmath/distinfo index 80ce83024567..0d6667634bee 100644 --- a/math/stanmath/distinfo +++ b/math/stanmath/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1693983643 -SHA256 (stan-dev-math-v4.7.0_GH0.tar.gz) = c314325d20c3f4a3b6eda31b41f84f71c3fff9521906b5c3ff671e5702ded92f -SIZE (stan-dev-math-v4.7.0_GH0.tar.gz) = 30466004 +TIMESTAMP = 1706081004 +SHA256 (stan-dev-math-v4.8.1_GH0.tar.gz) = 78e115c89c298fb9e6fa5941b7e39c84cfea0a8f491a0dc556ab5746d5699136 +SIZE (stan-dev-math-v4.8.1_GH0.tar.gz) = 30104206 diff --git a/math/stanmath/pkg-plist b/math/stanmath/pkg-plist index 273562441ce7..30ac8e0bd7c5 100644 --- a/math/stanmath/pkg-plist +++ b/math/stanmath/pkg-plist @@ -143,8 +143,10 @@ include/stan/math/fwd/fun/value_of.hpp include/stan/math/fwd/fun/value_of_rec.hpp include/stan/math/fwd/functor.hpp include/stan/math/fwd/functor/apply_scalar_unary.hpp +include/stan/math/fwd/functor/finite_diff.hpp include/stan/math/fwd/functor/gradient.hpp include/stan/math/fwd/functor/hessian.hpp +include/stan/math/fwd/functor/integrate_1d.hpp include/stan/math/fwd/functor/jacobian.hpp include/stan/math/fwd/functor/operands_and_partials.hpp include/stan/math/fwd/functor/partials_propagator.hpp @@ -185,6 +187,7 @@ include/stan/math/opencl/kernel_generator.hpp include/stan/math/opencl/kernel_generator/append.hpp include/stan/math/opencl/kernel_generator/as_column_vector_or_scalar.hpp include/stan/math/opencl/kernel_generator/as_operation_cl.hpp +include/stan/math/opencl/kernel_generator/assignment_ops.hpp include/stan/math/opencl/kernel_generator/binary_operation.hpp include/stan/math/opencl/kernel_generator/block_zero_based.hpp include/stan/math/opencl/kernel_generator/broadcast.hpp @@ -288,6 +291,7 @@ include/stan/math/opencl/prim/bernoulli_lpmf.hpp include/stan/math/opencl/prim/beta_binomial_lpmf.hpp include/stan/math/opencl/prim/beta_lpdf.hpp include/stan/math/opencl/prim/beta_proportion_lpdf.hpp +include/stan/math/opencl/prim/binomial_logit_glm_lpmf.hpp include/stan/math/opencl/prim/binomial_logit_lpmf.hpp include/stan/math/opencl/prim/binomial_lpmf.hpp include/stan/math/opencl/prim/block.hpp @@ -508,6 +512,7 @@ include/stan/math/opencl/rev/floor.hpp include/stan/math/opencl/rev/fmax.hpp include/stan/math/opencl/rev/fmin.hpp include/stan/math/opencl/rev/fmod.hpp +include/stan/math/opencl/rev/grad.hpp include/stan/math/opencl/rev/hypot.hpp include/stan/math/opencl/rev/inv.hpp include/stan/math/opencl/rev/inv_Phi.hpp @@ -1002,6 +1007,7 @@ include/stan/math/prim/fun/scaled_add.hpp include/stan/math/prim/fun/sd.hpp include/stan/math/prim/fun/segment.hpp include/stan/math/prim/fun/select.hpp +include/stan/math/prim/fun/serializer.hpp include/stan/math/prim/fun/sign.hpp include/stan/math/prim/fun/signbit.hpp include/stan/math/prim/fun/simplex_constrain.hpp @@ -1220,6 +1226,7 @@ include/stan/math/prim/prob/binomial_cdf_log.hpp include/stan/math/prim/prob/binomial_lccdf.hpp include/stan/math/prim/prob/binomial_lcdf.hpp include/stan/math/prim/prob/binomial_log.hpp +include/stan/math/prim/prob/binomial_logit_glm_lpmf.hpp include/stan/math/prim/prob/binomial_logit_log.hpp include/stan/math/prim/prob/binomial_logit_lpmf.hpp include/stan/math/prim/prob/binomial_lpmf.hpp @@ -1250,6 +1257,8 @@ include/stan/math/prim/prob/chi_square_rng.hpp include/stan/math/prim/prob/dirichlet_log.hpp include/stan/math/prim/prob/dirichlet_lpdf.hpp include/stan/math/prim/prob/dirichlet_lpmf.hpp +include/stan/math/prim/prob/dirichlet_multinomial_lpmf.hpp +include/stan/math/prim/prob/dirichlet_multinomial_rng.hpp include/stan/math/prim/prob/dirichlet_rng.hpp include/stan/math/prim/prob/discrete_range_ccdf_log.hpp include/stan/math/prim/prob/discrete_range_cdf.hpp
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