Date: Sat, 28 Feb 2026 16:05:39 +0000 From: Rodrigo Osorio <rodrigo@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 84d3f7ae2825 - main - biology/p5-TrimGalore: update 0.6.10 -> 0.6.11 Message-ID: <69a31253.36ea5.4a6c1c4e@gitrepo.freebsd.org>
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The branch main has been updated by rodrigo: URL: https://cgit.FreeBSD.org/ports/commit/?id=84d3f7ae2825d7144e4a637c9ca9d792a305dc3b commit 84d3f7ae2825d7144e4a637c9ca9d792a305dc3b Author: Rodrigo Osorio <rodrigo@FreeBSD.org> AuthorDate: 2026-02-28 15:45:10 +0000 Commit: Rodrigo Osorio <rodrigo@FreeBSD.org> CommitDate: 2026-02-28 16:05:31 +0000 biology/p5-TrimGalore: update 0.6.10 -> 0.6.11 Changelog: https://github.com/FelixKrueger/TrimGalore/releases/tag/0.6.11 Reorder Makefile to make portclippy happy --- biology/p5-TrimGalore/Makefile | 6 +++--- biology/p5-TrimGalore/distinfo | 6 +++--- biology/p5-TrimGalore/pkg-plist | 8 ++++++-- 3 files changed, 12 insertions(+), 8 deletions(-) diff --git a/biology/p5-TrimGalore/Makefile b/biology/p5-TrimGalore/Makefile index cd7a5cf7ffe7..68ba8576a73f 100644 --- a/biology/p5-TrimGalore/Makefile +++ b/biology/p5-TrimGalore/Makefile @@ -1,5 +1,5 @@ PORTNAME= TrimGalore -DISTVERSION= 0.6.10 +DISTVERSION= 0.6.11 CATEGORIES= biology perl5 python PKGNAMEPREFIX= p5- @@ -15,11 +15,11 @@ RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cutadapt>=2.5:biology/py-cutadapt@${PY_FLAVO # Future: Can 3.4+ be determined from cutadapt dep? USES= perl5 python:env shebangfix -USE_PERL5= run USE_GITHUB= yes +GH_ACCOUNT= FelixKrueger +USE_PERL5= run SHEBANG_FILES= trim_galore -GH_ACCOUNT= FelixKrueger NO_ARCH= yes NO_BUILD= yes diff --git a/biology/p5-TrimGalore/distinfo b/biology/p5-TrimGalore/distinfo index 93f6807aef88..4a185db8ac36 100644 --- a/biology/p5-TrimGalore/distinfo +++ b/biology/p5-TrimGalore/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1721746682 -SHA256 (FelixKrueger-TrimGalore-0.6.10_GH0.tar.gz) = 3a4e414fc658d6eb4356f1572351204e8475a9d7dc79f6798270b57d35bda017 -SIZE (FelixKrueger-TrimGalore-0.6.10_GH0.tar.gz) = 26831358 +TIMESTAMP = 1772290941 +SHA256 (FelixKrueger-TrimGalore-0.6.11_GH0.tar.gz) = 5eab6d32bf738db9180d2d1294390c1f53e4c0cf41c367c742ae48f20d81cfa4 +SIZE (FelixKrueger-TrimGalore-0.6.11_GH0.tar.gz) = 29911759 diff --git a/biology/p5-TrimGalore/pkg-plist b/biology/p5-TrimGalore/pkg-plist index e9859dc7b3b4..d148d91eb17b 100644 --- a/biology/p5-TrimGalore/pkg-plist +++ b/biology/p5-TrimGalore/pkg-plist @@ -1,17 +1,21 @@ bin/trim_galore bin/trim_galore-test +%%DATADIR%%/test_files/10K_150bp.fastq.gz %%DATADIR%%/test_files/4_seqs_with_Ns.fastq.gz +%%DATADIR%%/test_files/PolyA.fastq.gz +%%DATADIR%%/test_files/PolyT.fastq.gz %%DATADIR%%/test_files/clock_10K_R1.fastq.gz %%DATADIR%%/test_files/clock_10K_R2.fastq.gz %%DATADIR%%/test_files/colorspace_file.fastq %%DATADIR%%/test_files/empty_file.fastq +%%DATADIR%%/test_files/illumina10K_with_polyA.fastq.gz %%DATADIR%%/test_files/illumina_100K.fastq.gz %%DATADIR%%/test_files/illumina_100K.fastq.gz_trimming_report.txt %%DATADIR%%/test_files/illumina_10K.fastq.gz -%%DATADIR%%/test_files/illumina_10K.fastq.gz_trimming_report.txt -%%DATADIR%%/test_files/illumina_10K_trimmed.fq.gz %%DATADIR%%/test_files/nextera_100K.fastq.gz %%DATADIR%%/test_files/nextera_100K.fastq.gz_trimming_report.txt +%%DATADIR%%/test_files/polyAT_R1.fastq.gz +%%DATADIR%%/test_files/polyAT_R2.fastq.gz %%DATADIR%%/test_files/smallRNA_100K.fastq.gz %%DATADIR%%/test_files/smallRNA_100K.fastq.gz_trimming_report.txt %%DATADIR%%/test_files/smallRNA_100K_R1.fastq.gz_trimming_report.txthome | help
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