Date: Sun, 16 Jul 2023 13:20:21 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 63e5ba4396f4 - main - biology/bcf-score: Unbreak build with clang 16 Message-ID: <202307161320.36GDKLHF058035@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=63e5ba4396f40d97df99b2856113afcb7623d7c9 commit 63e5ba4396f40d97df99b2856113afcb7623d7c9 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2023-07-16 13:19:06 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2023-07-16 13:19:06 +0000 biology/bcf-score: Unbreak build with clang 16 Patch function pointer assignments that went from warning to error with the compiler upgrade Reported by: pkg-fallout --- biology/bcf-score/Makefile | 1 + biology/bcf-score/files/patch-plugins_munge.c | 11 +++++++++++ biology/bcf-score/files/patch-plugins_score.c | 11 +++++++++++ 3 files changed, 23 insertions(+) diff --git a/biology/bcf-score/Makefile b/biology/bcf-score/Makefile index 96207e1f8f84..f183641f4a4f 100644 --- a/biology/bcf-score/Makefile +++ b/biology/bcf-score/Makefile @@ -1,5 +1,6 @@ PORTNAME= bcf-score DISTVERSION= 1.16 +PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= https://software.broadinstitute.org/software/score/ DISTFILES+= score_${DISTVERSION}-20221221.tar.gz diff --git a/biology/bcf-score/files/patch-plugins_munge.c b/biology/bcf-score/files/patch-plugins_munge.c new file mode 100644 index 000000000000..8906f57a0a73 --- /dev/null +++ b/biology/bcf-score/files/patch-plugins_munge.c @@ -0,0 +1,11 @@ +--- plugins/munge.c.orig 2023-07-16 07:57:54 UTC ++++ plugins/munge.c +@@ -120,7 +120,7 @@ int tsv_read_string(tsv_t *tsv, bcf1_t *rec, void *usr + return 0; + } + +-static const int (*tsv_setters[])(tsv_t *tsv, bcf1_t *rec, void *usr) = {tsv_setter_id_flexible, // SNP ++static int (*tsv_setters[])(tsv_t *tsv, bcf1_t *rec, void *usr) = {tsv_setter_id_flexible, // SNP + tsv_setter_pos_flexible, // BP + tsv_setter_chrom_flexible, // CHR + tsv_read_allele, // A1 diff --git a/biology/bcf-score/files/patch-plugins_score.c b/biology/bcf-score/files/patch-plugins_score.c new file mode 100644 index 000000000000..c90a66f313b6 --- /dev/null +++ b/biology/bcf-score/files/patch-plugins_score.c @@ -0,0 +1,11 @@ +--- plugins/score.c.orig 2023-07-16 08:04:54 UTC ++++ plugins/score.c +@@ -140,7 +140,7 @@ static int tsv_read_allele(tsv_t *tsv, bcf1_t *rec, vo + return 0; + } + +-static const int (*tsv_setters[])(tsv_t *tsv, bcf1_t *rec, void *usr) = {tsv_setter_id_flexible, // SNP ++static int (*tsv_setters[])(tsv_t *tsv, bcf1_t *rec, void *usr) = {tsv_setter_id_flexible, // SNP + tsv_setter_pos_flexible, // BP + tsv_setter_chrom_flexible, // CHR + tsv_read_allele, // A1
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