Date: Tue, 21 Feb 2017 11:35:46 +0000 From: bugzilla-noreply@freebsd.org To: freebsd-ports-bugs@FreeBSD.org Subject: [Bug 217269] /science/py-pyteomics: Update to 3.4.1 Message-ID: <bug-217269-13@https.bugs.freebsd.org/bugzilla/>
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D217269 Bug ID: 217269 Summary: /science/py-pyteomics: Update to 3.4.1 Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Severity: Affects Some People Priority: --- Component: Individual Port(s) Assignee: freebsd-ports-bugs@FreeBSD.org Reporter: joneum@bsdproject.de Created attachment 180183 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D180183&action= =3Dedit Patch http://pythonhosted.org/pyteomics/changelog.html#id1 Add selenocysteine (=E2=80=9CU=E2=80=9D) and pyrrolysine (=E2=80=9C= O=E2=80=9D) to pyteomics.mass.std_aa_mass and pyteomics.mass.std_aa_comp. An optional parameter encoding is now accepted by text file readers (pyteomics.mgf.read() and pyteomics.fasta.read()). This can be useful for M= GF files with non-ASCII spectrum titles or comments. New function pyteomics.mass.mass.isotopologues(). Performance improvements in pyteomics.electrochem.pI(). Fix the issue in pyteomics.xml which resulted in very long processi= ng times for indexed XML files with a byte ordering mark (BOM). Support all standard and non-standard data array names in pyteomics.mzml. Change default value of retrieve_refs in pyteomics.mzid.read() to T= rue. Preserve unit information extracted from cvParam tags in PSI XML fi= les. Fix in pyteomics.mzxml, other minor fixes. poudriere build fine for: 10.3 amd + i386 11.0 amd + i386 12-current amd + i386 (r313761) portlint is also fine. Cheers jochen --=20 You are receiving this mail because: You are the assignee for the bug.=
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