Date: Mon, 28 May 2007 17:00:44 -0700 (PDT) From: Mauricio Herrera Cuadra <mauricio@arareko.net> To: bug-followup@FreeBSD.org, Martin Wilke <miwi@FreeBSD.org>, freebsd-python@FreeBSD.org Subject: Re: ports/111817: [PATCH] biology/py-biopython: update to 1.43 Message-ID: <844548.12109.qm@web31707.mail.mud.yahoo.com>
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[-- Attachment #1 --] The error is because the setup.py script goes into interactive mode asking to install some extra modules. I've created a extra patch for skipping this and which installs everything as default, please use the attachment as the definitive patch for the whole port. Regards, Mauricio. -- MAURICIO HERRERA CUADRA mauricio@arareko.net http://www.arareko.net/ ----- Original Message ---- From: Martin Wilke <miwi@FreeBSD.org> To: Mauricio Herrera Cuadra <mauricio@arareko.net> Sent: Monday, May 28, 2007 6:30:26 AM Subject: Re: ports/111817: [PATCH] biology/py-biopython: update to 1.43 http://miwi.homeunix.com/tb/errors/7.0-HEAD/py24-biopython-1.43.log build error. Could you fix this ? - -- Martin Wilke | irc.unixfreunde.de #bsd miwi@FreeBSD.org | miwi@unixfreunde.de FreeBSD Committer | Power to Serve [-- Attachment #2 --] diff -ruN biology/py-biopython.old/Makefile biology/py-biopython/Makefile --- biology/py-biopython.old/Makefile Tue Oct 31 07:25:21 2006 +++ biology/py-biopython/Makefile Mon May 28 16:33:29 2007 @@ -1,12 +1,12 @@ -# New ports collection makefile for: py-biopython -# Date created: 28 July 2000 -# Whom: Johann Visagie <johann@egenetics.com> +# New ports collection makefile for: py-biopython +# Date created: 28 July 2000 +# Whom: Johann Visagie <johann@egenetics.com> # # $FreeBSD: ports/biology/py-biopython/Makefile,v 1.22 2006/10/31 13:25:21 miwi Exp $ # PORTNAME= biopython -PORTVERSION= 1.42 +PORTVERSION= 1.43 CATEGORIES= biology python MASTER_SITES= http://www.biopython.org/DIST/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff -ruN biology/py-biopython.old/distinfo biology/py-biopython/distinfo --- biology/py-biopython.old/distinfo Tue Oct 31 07:25:21 2006 +++ biology/py-biopython/distinfo Mon May 28 16:33:29 2007 @@ -1,3 +1,3 @@ -MD5 (biopython-1.42.tar.gz) = 6d9bf58d0fcfa5a3b2053ad419069ff3 -SHA256 (biopython-1.42.tar.gz) = ba4d00fdf7de67196ecba317dee09a14850b40596bd83d73e458c5f19fc9fc58 -SIZE (biopython-1.42.tar.gz) = 3933507 +MD5 (biopython-1.43.tar.gz) = 3c275b321bb1db7d8bda764913aaedcd +SHA256 (biopython-1.43.tar.gz) = eb424da9efddbf376c31660786ecb34ff893ea752bf7300f4a06d1b8c6ba175b +SIZE (biopython-1.43.tar.gz) = 3867907 diff -ruN biology/py-biopython.old/files/patch-setup.py biology/py-biopython/files/patch-setup.py --- biology/py-biopython.old/files/patch-setup.py Wed Dec 31 18:00:00 1969 +++ biology/py-biopython/files/patch-setup.py Mon May 28 17:03:47 2007 @@ -0,0 +1,34 @@ +--- setup.py.orig Sat Mar 17 13:21:04 2007 ++++ setup.py Mon May 28 17:01:45 2007 +@@ -112,7 +112,7 @@ + + + # Compile KDTree ? Not compiled by default +- print "\n*** Bio.KDTree *** NOT built by default " ++# print "\n*** Bio.KDTree *** NOT built by default " + kdtree_msg = """ + The Bio.PDB.NeighborSearch module depends on the Bio.KDTree module, + which in turn, depends on C++ code that does not compile cleanly on +@@ -120,14 +120,14 @@ + + Would you like to build Bio.KDTree ?""" + +- if get_yes_or_no (kdtree_msg, 0): +- NUMPY_PACKAGES.append("Bio.KDTree") +- NUMPY_EXTENSIONS.append( +- CplusplusExtension('Bio.KDTree._CKDTree', +- ["Bio/KDTree/KDTree.cpp", +- "Bio/KDTree/KDTree.swig.cpp"], +- libraries=["stdc++"], +- language="c++")) ++# if get_yes_or_no (kdtree_msg, 0): ++ NUMPY_PACKAGES.append("Bio.KDTree") ++ NUMPY_EXTENSIONS.append( ++ CplusplusExtension('Bio.KDTree._CKDTree', ++ ["Bio/KDTree/KDTree.cpp", ++ "Bio/KDTree/KDTree.swig.cpp"], ++ libraries=["stdc++"], ++ language="c++")) + + + return 1 diff -ruN biology/py-biopython.old/pkg-plist biology/py-biopython/pkg-plist --- biology/py-biopython.old/pkg-plist Tue Oct 31 07:25:21 2006 +++ biology/py-biopython/pkg-plist Mon May 28 16:33:29 2007 @@ -323,6 +323,9 @@ %%PYTHON_SITELIBDIR%%/Bio/GenBank/Record.py %%PYTHON_SITELIBDIR%%/Bio/GenBank/Record.pyc %%PYTHON_SITELIBDIR%%/Bio/GenBank/Record.pyo +%%PYTHON_SITELIBDIR%%/Bio/GenBank/Scanner.py +%%PYTHON_SITELIBDIR%%/Bio/GenBank/Scanner.pyc +%%PYTHON_SITELIBDIR%%/Bio/GenBank/Scanner.pyo %%PYTHON_SITELIBDIR%%/Bio/GenBank/__init__.py %%PYTHON_SITELIBDIR%%/Bio/GenBank/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/GenBank/__init__.pyo @@ -389,6 +392,16 @@ %%PYTHON_SITELIBDIR%%/Bio/InterPro/__init__.py %%PYTHON_SITELIBDIR%%/Bio/InterPro/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/InterPro/__init__.pyo +%%PYTHON_SITELIBDIR%%/Bio/KDTree/CKDTree.py +%%PYTHON_SITELIBDIR%%/Bio/KDTree/CKDTree.pyc +%%PYTHON_SITELIBDIR%%/Bio/KDTree/CKDTree.pyo +%%PYTHON_SITELIBDIR%%/Bio/KDTree/KDTree.py +%%PYTHON_SITELIBDIR%%/Bio/KDTree/KDTree.pyc +%%PYTHON_SITELIBDIR%%/Bio/KDTree/KDTree.pyo +%%PYTHON_SITELIBDIR%%/Bio/KDTree/_CKDTree.so +%%PYTHON_SITELIBDIR%%/Bio/KDTree/__init__.py +%%PYTHON_SITELIBDIR%%/Bio/KDTree/__init__.pyc +%%PYTHON_SITELIBDIR%%/Bio/KDTree/__init__.pyo %%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound/__init__.py %%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound/__init__.pyo @@ -642,6 +655,9 @@ %%PYTHON_SITELIBDIR%%/Bio/PDB/PDBParser.py %%PYTHON_SITELIBDIR%%/Bio/PDB/PDBParser.pyc %%PYTHON_SITELIBDIR%%/Bio/PDB/PDBParser.pyo +%%PYTHON_SITELIBDIR%%/Bio/PDB/PSEA.py +%%PYTHON_SITELIBDIR%%/Bio/PDB/PSEA.pyc +%%PYTHON_SITELIBDIR%%/Bio/PDB/PSEA.pyo %%PYTHON_SITELIBDIR%%/Bio/PDB/Polypeptide.py %%PYTHON_SITELIBDIR%%/Bio/PDB/Polypeptide.pyc %%PYTHON_SITELIBDIR%%/Bio/PDB/Polypeptide.pyo @@ -793,9 +809,33 @@ %%PYTHON_SITELIBDIR%%/Bio/SeqFeature.py %%PYTHON_SITELIBDIR%%/Bio/SeqFeature.pyc %%PYTHON_SITELIBDIR%%/Bio/SeqFeature.pyo +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/ClustalIO.py +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/ClustalIO.pyc +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/ClustalIO.pyo %%PYTHON_SITELIBDIR%%/Bio/SeqIO/FASTA.py %%PYTHON_SITELIBDIR%%/Bio/SeqIO/FASTA.pyc %%PYTHON_SITELIBDIR%%/Bio/SeqIO/FASTA.pyo +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/FastaIO.py +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/FastaIO.pyc +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/FastaIO.pyo +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/InsdcIO.py +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/InsdcIO.pyc +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/InsdcIO.pyo +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/Interfaces.py +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/Interfaces.pyc +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/Interfaces.pyo +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/NexusIO.py +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/NexusIO.pyc +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/NexusIO.pyo +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/PhylipIO.py +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/PhylipIO.pyc +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/PhylipIO.pyo +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/StockholmIO.py +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/StockholmIO.pyc +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/StockholmIO.pyo +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/SwissIO.py +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/SwissIO.pyc +%%PYTHON_SITELIBDIR%%/Bio/SeqIO/SwissIO.pyo %%PYTHON_SITELIBDIR%%/Bio/SeqIO/__init__.py %%PYTHON_SITELIBDIR%%/Bio/SeqIO/__init__.pyc %%PYTHON_SITELIBDIR%%/Bio/SeqIO/__init__.pyo @@ -1154,91 +1194,92 @@ %%PYTHON_SITELIBDIR%%/Martel/setup.py %%PYTHON_SITELIBDIR%%/Martel/setup.pyc %%PYTHON_SITELIBDIR%%/Martel/setup.pyo -@dirrm %%PYTHON_SITELIBDIR%%/Martel -@dirrm %%PYTHON_SITELIBDIR%%/BioSQL -@dirrm %%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord -@dirrm %%PYTHON_SITELIBDIR%%/Bio/writers -@dirrm %%PYTHON_SITELIBDIR%%/Bio/formatdefs -@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot -@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/embl -@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/blast -@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions -@dirrm %%PYTHON_SITELIBDIR%%/Bio/dbdefs -@dirrm %%PYTHON_SITELIBDIR%%/Bio/config -@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders/SeqRecord -@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders/Search -@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Wise -@dirrm %%PYTHON_SITELIBDIR%%/Bio/WWW -@dirrm %%PYTHON_SITELIBDIR%%/Bio/UniGene -@dirrm %%PYTHON_SITELIBDIR%%/Bio/SwissProt -@dirrm %%PYTHON_SITELIBDIR%%/Bio/SubsMat -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Statistics -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Sequencing -@dirrm %%PYTHON_SITELIBDIR%%/Bio/SeqUtils -@dirrm %%PYTHON_SITELIBDIR%%/Bio/SeqIO -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Saf -@dirrm %%PYTHON_SITELIBDIR%%/Bio/SVDSuperimposer -@dirrm %%PYTHON_SITELIBDIR%%/Bio/SCOP -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Restriction/_Update -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Restriction -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Rebase -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Prosite -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Pathway/Rep -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Pathway -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Parsers -@dirrm %%PYTHON_SITELIBDIR%%/Bio/PDB -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Nexus -@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/Gene -@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/BackPropagation -@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Ndb -@dirrm %%PYTHON_SITELIBDIR%%/Bio/NMR -@dirrm %%PYTHON_SITELIBDIR%%/Bio/NBRF -@dirrm %%PYTHON_SITELIBDIR%%/Bio/MultiProc -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Mindy -@dirrm %%PYTHON_SITELIBDIR%%/Bio/MetaTool -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Medline -@dirrm %%PYTHON_SITELIBDIR%%/Bio/MEME -@dirrm %%PYTHON_SITELIBDIR%%/Bio/LocusLink -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Kabat -@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Map -@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme -@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound -@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG -@dirrm %%PYTHON_SITELIBDIR%%/Bio/InterPro -@dirrm %%PYTHON_SITELIBDIR%%/Bio/IntelliGenetics -@dirrm %%PYTHON_SITELIBDIR%%/Bio/HMM -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Graphics -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Gobase -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Geo -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GenBank -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GFF -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Selection -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Repair -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Mutation -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Crossover -@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Fasta -@dirrm %%PYTHON_SITELIBDIR%%/Bio/FSSP -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Enzyme -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Encodings -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Emboss +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Affy +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Ais +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Align +@dirrm %%PYTHON_SITELIBDIR%%/Bio/AlignAce +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Alphabet +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Application +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Blast +@dirrm %%PYTHON_SITELIBDIR%%/Bio/CAPS +@dirrm %%PYTHON_SITELIBDIR%%/Bio/CDD +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Clustalw +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Cluster +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Compass +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Crystal +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Data +@dirrm %%PYTHON_SITELIBDIR%%/Bio/ECell @dirrm %%PYTHON_SITELIBDIR%%/Bio/EUtils/DTDs @dirrm %%PYTHON_SITELIBDIR%%/Bio/EUtils -@dirrm %%PYTHON_SITELIBDIR%%/Bio/ECell -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Data -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Crystal -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Compass -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Cluster -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Clustalw -@dirrm %%PYTHON_SITELIBDIR%%/Bio/CDD -@dirrm %%PYTHON_SITELIBDIR%%/Bio/CAPS -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Blast -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Application -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Alphabet -@dirrm %%PYTHON_SITELIBDIR%%/Bio/AlignAce -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Align -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Ais -@dirrm %%PYTHON_SITELIBDIR%%/Bio/Affy +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Emboss +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Encodings +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Enzyme +@dirrm %%PYTHON_SITELIBDIR%%/Bio/FSSP +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Fasta +@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Crossover +@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Mutation +@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Repair +@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA/Selection +@dirrm %%PYTHON_SITELIBDIR%%/Bio/GA +@dirrm %%PYTHON_SITELIBDIR%%/Bio/GFF +@dirrm %%PYTHON_SITELIBDIR%%/Bio/GenBank +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Geo +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Gobase +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Graphics +@dirrm %%PYTHON_SITELIBDIR%%/Bio/HMM +@dirrm %%PYTHON_SITELIBDIR%%/Bio/IntelliGenetics +@dirrm %%PYTHON_SITELIBDIR%%/Bio/InterPro +@dirrm %%PYTHON_SITELIBDIR%%/Bio/KDTree +@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Compound +@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Enzyme +@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG/Map +@dirrm %%PYTHON_SITELIBDIR%%/Bio/KEGG +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Kabat +@dirrm %%PYTHON_SITELIBDIR%%/Bio/LocusLink +@dirrm %%PYTHON_SITELIBDIR%%/Bio/MEME +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Medline +@dirrm %%PYTHON_SITELIBDIR%%/Bio/MetaTool +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Mindy +@dirrm %%PYTHON_SITELIBDIR%%/Bio/MultiProc +@dirrm %%PYTHON_SITELIBDIR%%/Bio/NBRF +@dirrm %%PYTHON_SITELIBDIR%%/Bio/NMR +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Ndb +@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/BackPropagation +@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork/Gene +@dirrm %%PYTHON_SITELIBDIR%%/Bio/NeuralNetwork +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Nexus +@dirrm %%PYTHON_SITELIBDIR%%/Bio/PDB +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Parsers +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Pathway/Rep +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Pathway +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Prosite +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Rebase +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Restriction/_Update +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Restriction +@dirrm %%PYTHON_SITELIBDIR%%/Bio/SCOP +@dirrm %%PYTHON_SITELIBDIR%%/Bio/SVDSuperimposer +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Saf +@dirrm %%PYTHON_SITELIBDIR%%/Bio/SeqIO +@dirrm %%PYTHON_SITELIBDIR%%/Bio/SeqUtils +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Sequencing +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Statistics +@dirrm %%PYTHON_SITELIBDIR%%/Bio/SubsMat +@dirrm %%PYTHON_SITELIBDIR%%/Bio/SwissProt +@dirrm %%PYTHON_SITELIBDIR%%/Bio/UniGene +@dirrm %%PYTHON_SITELIBDIR%%/Bio/WWW +@dirrm %%PYTHON_SITELIBDIR%%/Bio/Wise +@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders/Search +@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders/SeqRecord +@dirrm %%PYTHON_SITELIBDIR%%/Bio/builders +@dirrm %%PYTHON_SITELIBDIR%%/Bio/config +@dirrm %%PYTHON_SITELIBDIR%%/Bio/dbdefs +@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/blast +@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/embl +@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions/swissprot +@dirrm %%PYTHON_SITELIBDIR%%/Bio/expressions +@dirrm %%PYTHON_SITELIBDIR%%/Bio/formatdefs +@dirrm %%PYTHON_SITELIBDIR%%/Bio/writers/SeqRecord +@dirrm %%PYTHON_SITELIBDIR%%/Bio/writers @dirrm %%PYTHON_SITELIBDIR%%/Bio +@dirrm %%PYTHON_SITELIBDIR%%/BioSQL +@dirrm %%PYTHON_SITELIBDIR%%/Martelhelp
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