Date: Sun, 11 Jan 2026 20:40:12 +0000 From: Jason W. Bacon <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: aff412a94985 - main - biology/sra-tools: Unbreak with extra JDK present Message-ID: <69640aac.e408.736fcd51@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=aff412a949854743db3ffc64a9d8e2ac3bdc885d commit aff412a949854743db3ffc64a9d8e2ac3bdc885d Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2026-01-11 20:31:18 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2026-01-11 20:40:11 +0000 biology/sra-tools: Unbreak with extra JDK present Cmake find_package(Java) uses the latest version found, and plist varies depending on the version used. Set JAVE_HOME to limit cmake's search to the version specified in the port. This is the only way to control find_package() for Java versions. --- biology/sra-tools/Makefile | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/biology/sra-tools/Makefile b/biology/sra-tools/Makefile index 4be7668701d9..e928c77695a1 100644 --- a/biology/sra-tools/Makefile +++ b/biology/sra-tools/Makefile @@ -1,6 +1,6 @@ PORTNAME= sra-tools DISTVERSION= 3.3.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology java MAINTAINER= jwb@FreeBSD.org @@ -36,6 +36,8 @@ GH_ACCOUNT= ncbi GH_TUPLE+= ncbi:ncbi-vdb:${DISTVERSION}:vdb/ncbi-vdb CMAKE_ARGS+= -DVDB_LIBDIR:STRING=${WRKSRC}/ncbi-vdb/build/lib +# Prevent cmake from using a later Java version, if present +CMAKE_ARGS+= -DJAVA_HOME:PATH=${JAVA_HOME} PLIST_SUB= PORTVERSION=${PORTVERSION}home | help
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