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Date:      Sun, 29 Mar 2026 13:25:36 +0000
From:      Jason W. Bacon <jwb@FreeBSD.org>
To:        ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org
Subject:   git: 0d69b76f0fd1 - main - biology/samtools: Update to 1.23.1
Message-ID:  <69c92850.202cf.5aa7aefc@gitrepo.freebsd.org>
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The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=0d69b76f0fd1da45410da20f632ec16b7e71fb7d

commit 0d69b76f0fd1da45410da20f632ec16b7e71fb7d
Author:     Jason W. Bacon <jwb@FreeBSD.org>
AuthorDate: 2026-03-29 13:24:50 +0000
Commit:     Jason W. Bacon <jwb@FreeBSD.org>
CommitDate: 2026-03-29 13:25:32 +0000

    biology/samtools: Update to 1.23.1
    
    Several bug fixes and code improvements
    Changes: https://github.com/samtools/samtools/releases
---
 biology/samtools/Makefile | 4 +++-
 biology/samtools/distinfo | 6 +++---
 2 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile
index f0ce1807eecd..8b38c60021ae 100644
--- a/biology/samtools/Makefile
+++ b/biology/samtools/Makefile
@@ -1,5 +1,5 @@
 PORTNAME=	samtools
-DISTVERSION=	1.22
+DISTVERSION=	1.23.1
 CATEGORIES=	biology
 
 MAINTAINER=	jwb@FreeBSD.org
@@ -22,6 +22,8 @@ GNU_CONFIGURE=	yes
 GNU_CONFIGURE_MANPREFIX=	${PREFIX}/share
 SHEBANG_FILES=	misc/*.pl misc/plot-bamstats test/test.pl
 
+CONFIGURE_ARGS=	--with-htslib=system
+
 TEST_TARGET=	test
 
 .include <bsd.port.mk>
diff --git a/biology/samtools/distinfo b/biology/samtools/distinfo
index 69760896c894..2b86f5f2668a 100644
--- a/biology/samtools/distinfo
+++ b/biology/samtools/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1748951307
-SHA256 (samtools-samtools-1.22_GH0.tar.gz) = dbe62a97d19634a930033ce302b340a5109263efc371b83481182385a98bcdda
-SIZE (samtools-samtools-1.22_GH0.tar.gz) = 5742299
+TIMESTAMP = 1774784873
+SHA256 (samtools-samtools-1.23.1_GH0.tar.gz) = 61314c16f6b502998f79c8d5d3d92f0ab1aab1ca23d60b8abae74e53a4119c87
+SIZE (samtools-samtools-1.23.1_GH0.tar.gz) = 5758667
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