Date: Sat, 18 Apr 2026 01:38:16 +0000 From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 569ccc1faab2 - main - math/py-arviz-stats: New port: Statistical computation and diagnostics for ArviZ Message-ID: <69e2e088.1916c.5dd92fe1@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=569ccc1faab223aa719be6b250b61f1a6fa1aed0 commit 569ccc1faab223aa719be6b250b61f1a6fa1aed0 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2026-04-17 18:41:52 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2026-04-18 01:38:08 +0000 math/py-arviz-stats: New port: Statistical computation and diagnostics for ArviZ --- math/Makefile | 1 + math/py-arviz-stats/Makefile | 37 ++++++++++++++++++++++ math/py-arviz-stats/distinfo | 3 ++ math/py-arviz-stats/files/patch-pyproject.toml | 20 ++++++++++++ .../files/patch-src_arviz__stats_base_core.py | 18 +++++++++++ math/py-arviz-stats/pkg-descr | 4 +++ 6 files changed, 83 insertions(+) diff --git a/math/Makefile b/math/Makefile index 4ac95d00bead..8e00d7427614 100644 --- a/math/Makefile +++ b/math/Makefile @@ -949,6 +949,7 @@ SUBDIR += py-apgl SUBDIR += py-arviz SUBDIR += py-arviz-base + SUBDIR += py-arviz-stats SUBDIR += py-arybo SUBDIR += py-autograd SUBDIR += py-awkward diff --git a/math/py-arviz-stats/Makefile b/math/py-arviz-stats/Makefile new file mode 100644 index 000000000000..d7edd8c04e12 --- /dev/null +++ b/math/py-arviz-stats/Makefile @@ -0,0 +1,37 @@ +PORTNAME= arviz-stats +DISTVERSIONPREFIX= v +DISTVERSION= 1.0.0 +CATEGORIES= math python +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Statistical computation and diagnostics for ArviZ +WWW= https://python.arviz.org/projects/stats/en/latest/ \ + https://github.com/arviz-devs/arviz-stats + +LICENSE= APACHE20 +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}flit-core>0:devel/py-flit-core@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.26.4:math/py-numpy1@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scipy>=1.13:science/py-scipy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}arviz-base>=1.0.0:math/py-arviz-base@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}xarray-einstats>=0:devel/py-xarray-einstats@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}xarray>=2024.11.0:devel/py-xarray@${PY_FLAVOR} +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest-cov>0:devel/py-pytest-cov@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}h5netcdf>0:science/py-h5netcdf@${PY_FLAVOR} + +USES= python +USE_PYTHON= pep517 concurrent autoplist pytest + +USE_GITHUB= yes +GH_ACCOUNT= arviz-devs + +NO_ARCH= yes + +TEST_ARGS= -p no:benchmark -p no:xdist -p no:relaxed +TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} + +# tests as of 1.0.0: 2449 passed, 5 skipped, 9 warnings in 47.13s + +.include <bsd.port.mk> diff --git a/math/py-arviz-stats/distinfo b/math/py-arviz-stats/distinfo new file mode 100644 index 000000000000..7af90649f022 --- /dev/null +++ b/math/py-arviz-stats/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1776438805 +SHA256 (arviz-devs-arviz-stats-v1.0.0_GH0.tar.gz) = 656212532e86b67bbda09a72a4d238ca1ec2b282e7f3fcb64ef484bb121136d1 +SIZE (arviz-devs-arviz-stats-v1.0.0_GH0.tar.gz) = 16551088 diff --git a/math/py-arviz-stats/files/patch-pyproject.toml b/math/py-arviz-stats/files/patch-pyproject.toml new file mode 100644 index 000000000000..9e592826f523 --- /dev/null +++ b/math/py-arviz-stats/files/patch-pyproject.toml @@ -0,0 +1,20 @@ +--- pyproject.toml.orig 2026-04-17 15:46:34 UTC ++++ pyproject.toml +@@ -5,7 +5,7 @@ readme = "README.md" + [project] + name = "arviz-stats" + readme = "README.md" +-requires-python = ">=3.12" ++requires-python = ">=3.11" + license = {file = "LICENSE"} + authors = [ + {name = "ArviZ team", email = "arvizdevs@gmail.com"} +@@ -25,7 +25,7 @@ dependencies = [ + ] + dynamic = ["version", "description"] + dependencies = [ +- "numpy>=2", ++ "numpy>=1.26.4", + "scipy>=1.13", + ] + diff --git a/math/py-arviz-stats/files/patch-src_arviz__stats_base_core.py b/math/py-arviz-stats/files/patch-src_arviz__stats_base_core.py new file mode 100644 index 000000000000..b03564941945 --- /dev/null +++ b/math/py-arviz-stats/files/patch-src_arviz__stats_base_core.py @@ -0,0 +1,18 @@ +--- src/arviz_stats/base/core.py.orig 2026-04-17 15:52:28 UTC ++++ src/arviz_stats/base/core.py +@@ -118,10 +118,13 @@ class _CoreBase: + "Sample quantiles in statistical packages," + The American Statistician, 50(4), pp. 361-365, 1996 + """ ++ _kwargs = {"axis": axis, "method": method} ++ if weights is not None: ++ _kwargs["weights"] = weights + if skipna: +- result = np.nanquantile(ary, quantile, axis=axis, method=method, weights=weights) ++ result = np.nanquantile(ary, quantile, **_kwargs) + else: +- result = np.quantile(ary, quantile, axis=axis, method=method, weights=weights) ++ result = np.quantile(ary, quantile, **_kwargs) + if np.ndim(quantile) == 0: + return result + return np.moveaxis(result, 0, -1) diff --git a/math/py-arviz-stats/pkg-descr b/math/py-arviz-stats/pkg-descr new file mode 100644 index 000000000000..5ecd932ac60e --- /dev/null +++ b/math/py-arviz-stats/pkg-descr @@ -0,0 +1,4 @@ +arviz-stats provides statistical computation and diagnostics for ArviZ. +It includes functions for posterior analysis, MCMC diagnostics, model +comparison (LOO, WAIC), convergence diagnostics (R-hat, ESS), and +other statistical summaries for Bayesian models.home | help
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