Date: Sun, 25 Jul 2021 06:13:24 +0000 From: bugzilla-noreply@freebsd.org To: python@FreeBSD.org Subject: [Bug 257400] science/py-scipy add option for Atlas blas Message-ID: <bug-257400-21822@https.bugs.freebsd.org/bugzilla/>
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D257400 Bug ID: 257400 Summary: science/py-scipy add option for Atlas blas Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Severity: Affects Some People Priority: --- Component: Individual Port(s) Assignee: python@FreeBSD.org Reporter: alt2600@icloud.com Flags: maintainer-feedback?(python@FreeBSD.org) Assignee: python@FreeBSD.org Created attachment 226666 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D226666&action= =3Dedit git-diff-scipy-add-atlas Not sure I made the git diff correctly, getting used to this, and hacking a= s I go, so I will also submit all the individual files. I took the basic Makefi= le framework from py-numpy and tweaked it so it would be appropriate for py-sc= ipy. I tried to do netlib as well, but while it seemed to configure to use the r= ight libraries the final package had a dependency on atlas-math. I didn't dig to hard to find why, but I suspect it is because the build notes for scipy say they will default built against Atlas if found as presumably the preferred blas. As I doubt anyone would be using netlib with this package, I opted to limit things to Atlas and OpenBLAS. The issue is I have no way to test the OpenBLAS is still working ok, but I can confirm the Atlas build is fine, an= d am using it to build towards qgis ultimately. I believe the OpenBLAS case shou= ld work as it is the same mechanism of numpy, which seems to be the master lib= rary to scipy if I'm reading things right. Would be great to get this patch to a= llow Atlas as well. ### ATLAS Configure abbreviated tail creating /tmp/tmpcc9xcnvz/tmp creating /tmp/tmpcc9xcnvz/tmp/tmpcc9xcnvz compile options: '-MMD -MF /tmp/tmpcc9xcnvz/file.c.d -c' cc: /tmp/tmpcc9xcnvz/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc10/gcc/x86_64-portbld-freebsd12.2/10.3.0/../../../'] Library tatlas was not found. Ignoring FOUND: include_dirs =3D ['/usr/local/include'] language =3D f77 libraries =3D ['alapack', 'ptf77blas', 'ptcblas'] library_dirs =3D ['/usr/local/lib'] define_macros =3D [('ATLAS_INFO', '"None"')] accelerate_info: NOT AVAILABLE FOUND: include_dirs =3D ['/usr/local/include'] language =3D f77 libraries =3D ['alapack', 'ptf77blas', 'ptcblas'] library_dirs =3D ['/usr/local/lib'] define_macros =3D [('ATLAS_INFO', '"None"')] blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -march=3Dwestmere -fstack-protector-strong -fno-strict-aliasing -= O2 -pipe -march=3Dwestmere -fstack-protector-strong -fno-strict-aliasing -fPIC creating /tmp/tmpqzo50prz/tmp creating /tmp/tmpqzo50prz/tmp/tmpqzo50prz compile options: '-MMD -MF /tmp/tmpqzo50prz/file.c.d -c' cc: /tmp/tmpqzo50prz/file.c libraries mkl_rt not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc10/gcc/x86_64-portbld-freebsd12.2/10.3.0/../../../'] NOT AVAILABLE blis_info: customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -march=3Dwestmere -fstack-protector-strong -fno-strict-aliasing -= O2 -pipe -march=3Dwestmere -fstack-protector-strong -fno-strict-aliasing -fPIC creating /tmp/tmp32nyh_rz/tmp creating /tmp/tmp32nyh_rz/tmp/tmp32nyh_rz compile options: '-MMD -MF /tmp/tmp32nyh_rz/file.c.d -c' cc: /tmp/tmp32nyh_rz/file.c libraries blis not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc10/gcc/x86_64-portbld-freebsd12.2/10.3.0/../../../'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=3DATLAS customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -march=3Dwestmere -fstack-protector-strong -fno-strict-aliasing -= O2 -pipe -march=3Dwestmere -fstack-protector-strong -fno-strict-aliasing -fPIC creating /tmp/tmp1llo3grv/tmp creating /tmp/tmp1llo3grv/tmp/tmp1llo3grv compile options: '-MMD -MF /tmp/tmp1llo3grv/file.c.d -c' cc: /tmp/tmp1llo3grv/file.c Setting PTATLAS=3DATLAS Setting PTATLAS=3DATLAS Setting PTATLAS=3DATLAS Setting PTATLAS=3DATLAS customize UnixCCompiler C compiler: cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -march=3Dwestmere -fstack-protector-strong -fno-strict-aliasing -= O2 -pipe -march=3Dwestmere -fstack-protector-strong -fno-strict-aliasing -fPIC creating /tmp/tmp3uzvn3cw/tmp creating /tmp/tmp3uzvn3cw/tmp/tmp3uzvn3cw compile options: '-MMD -MF /tmp/tmp3uzvn3cw/file.c.d -c' cc: /tmp/tmp3uzvn3cw/file.c libraries tatlas not found in ['/usr/lib', '/usr/local/lib', '/usr/local/lib/gcc10/gcc/x86_64-portbld-freebsd12.2/10.3.0/../../../'] Library tatlas was not found. Ignoring FOUND: include_dirs =3D ['/usr/local/include'] language =3D c define_macros =3D [('HAVE_CBLAS', None), ('ATLAS_INFO', '"None"')] libraries =3D ['ptf77blas', 'ptcblas'] library_dirs =3D ['/usr/local/lib'] FOUND: include_dirs =3D ['/usr/local/include'] language =3D c define_macros =3D [('HAVE_CBLAS', None), ('ATLAS_INFO', '"None"')] libraries =3D ['ptf77blas', 'ptcblas'] library_dirs =3D ['/usr/local/lib'] non-existing path in 'scipy/signal/windows': 'tests' non-existing path in 'scipy/sparse': 'sparsetools/sparsetools_impl.h' non-existing path in 'scipy/sparse': 'sparsetools/bsr_impl.h' non-existing path in 'scipy/sparse': 'sparsetools/csc_impl.h' non-existing path in 'scipy/sparse': 'sparsetools/csr_impl.h' non-existing path in 'scipy/sparse': 'sparsetools/other_impl.h' [makenpz] scipy/special/tests/data/boost.npz not rebuilt [makenpz] scipy/special/tests/data/gsl.npz not rebuilt [makenpz] scipy/special/tests/data/local.npz not rebuilt running config ## pkg info -dr py38-scipy /usr/ports/science/py-scipy|$} pkg info -dr py38-scipy py38-scipy-1.6.0 Depends on : py38-numpy-1.16.6_2,1 atlas-math-3.8.4_18,1 python38-3.8.11 gcc10-10.3.0 py38-setuptools-57.0.0 --=20 You are receiving this mail because: You are the assignee for the bug.=
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