Date: Fri, 24 Apr 2026 08:34:02 +0000
From: Yuri Victorovich <yuri@FreeBSD.org>
To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org
Subject: git: 581e099a8d05 - main - science/{,py-}phonopy: update 3.4.0=?utf-8?Q? =E2=86=92 3.5?=.1
Message-ID: <69eb2afa.30eb3.40454cfc@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=581e099a8d05ea8fa2bcd1cc11234b1f8d7b0272 commit 581e099a8d05ea8fa2bcd1cc11234b1f8d7b0272 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2026-04-24 07:53:41 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2026-04-24 08:33:35 +0000 science/{,py-}phonopy: update 3.4.0 → 3.5.1 --- science/phonopy/Makefile | 2 +- science/phonopy/distinfo | 6 +++--- science/py-phonopy/Makefile | 21 +++++---------------- science/py-phonopy/distinfo | 6 +++--- science/py-phonopy/files/patch-test_conftest.py | 23 +++++++++++++++++++++++ 5 files changed, 35 insertions(+), 23 deletions(-) diff --git a/science/phonopy/Makefile b/science/phonopy/Makefile index be8c4ead95fd..dfe8e60a441f 100644 --- a/science/phonopy/Makefile +++ b/science/phonopy/Makefile @@ -1,6 +1,6 @@ PORTNAME= phonopy DISTVERSIONPREFIX= v -DISTVERSION= 3.4.0 +DISTVERSION= 3.5.1 CATEGORIES= science python MAINTAINER= yuri@FreeBSD.org diff --git a/science/phonopy/distinfo b/science/phonopy/distinfo index 7a6c5a2b9ab1..c349b0fdb493 100644 --- a/science/phonopy/distinfo +++ b/science/phonopy/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1774757814 -SHA256 (phonopy-phonopy-v3.4.0_GH0.tar.gz) = 021c8b4100540dbd3cb0fb4cef9e060a2339ab0c92b7033259de1cad9e42ae1d -SIZE (phonopy-phonopy-v3.4.0_GH0.tar.gz) = 8136328 +TIMESTAMP = 1777008346 +SHA256 (phonopy-phonopy-v3.5.1_GH0.tar.gz) = 2aeaf0e363054c61e12b4948207cec5ddd70a50b68c9520fe813fe1e65439e2a +SIZE (phonopy-phonopy-v3.5.1_GH0.tar.gz) = 8136506 diff --git a/science/py-phonopy/Makefile b/science/py-phonopy/Makefile index 566821844f21..d680aff30ef0 100644 --- a/science/py-phonopy/Makefile +++ b/science/py-phonopy/Makefile @@ -1,6 +1,5 @@ PORTNAME= phonopy -DISTVERSION= 3.4.0 -PORTREVISION= 1 +DISTVERSION= 3.5.1 CATEGORIES= science python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -35,19 +34,9 @@ TEST_WRKSRC= ${WRKSRC}/test post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/phonopy/_phonopy${PYTHON_TAG}.so -# tests as of 3.0.1: (see https://github.com/phonopy/phonopy/issues/739) -# Results (47.21s): -# 26 failed -# 183 passed -# 6 skipped -# 53 warnings -# 272 errors - -# tests as of 3.4.0: -# Results (59.91s): -# 380 failed -# 1997 passed -# 22 skipped -# 52 warnings +# tests as of 3.5.1: +# Results (64.10s (0:01:04)): +# 880 passed +# 22 skipped .include <bsd.port.mk> diff --git a/science/py-phonopy/distinfo b/science/py-phonopy/distinfo index df4fa0631068..45a200b76146 100644 --- a/science/py-phonopy/distinfo +++ b/science/py-phonopy/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1774759850 -SHA256 (phonopy-3.4.0.tar.gz) = a4adc0ad23758c2b2459cd2ecf3c37a91a70fc7276bf83d79a853d36a80a15e3 -SIZE (phonopy-3.4.0.tar.gz) = 5127145 +TIMESTAMP = 1777015315 +SHA256 (phonopy-3.5.1.tar.gz) = 37869c383d0b1fa1355f17a1bb3599479406530d730791d71dc16186848db196 +SIZE (phonopy-3.5.1.tar.gz) = 5128062 diff --git a/science/py-phonopy/files/patch-test_conftest.py b/science/py-phonopy/files/patch-test_conftest.py new file mode 100644 index 000000000000..af2e20741878 --- /dev/null +++ b/science/py-phonopy/files/patch-test_conftest.py @@ -0,0 +1,23 @@ +-- Fix test crash by setting matplotlib to use non-interactive Agg backend. +-- This prevents segmentation faults when matplotlib tries to use GTK4 backend +-- in a headless FreeBSD environment during test execution. +-- See: https://github.com/phonopy/phonopy/issues/??? + +--- test/conftest.py.orig 2026-04-24 07:29:40 UTC ++++ test/conftest.py +@@ -5,12 +5,15 @@ from collections.abc import Callable + import pathlib + from collections.abc import Callable + ++import matplotlib + import numpy as np + import pytest + + import phonopy + from phonopy import Phonopy + from phonopy.structure.atoms import PhonopyAtoms ++ ++matplotlib.use("Agg") + + cwd = pathlib.Path(__file__).parent +home | help
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