Date: Sat, 04 Jul 2026 00:36:53 +0000 From: Jason W. Bacon <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 1f8de6517b90 - main - biology/py-goatools: Fix build with python 3.12 Message-ID: <6a4855a5.30903.3e2a2f83@gitrepo.freebsd.org>
index | next in thread | raw e-mail
The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=1f8de6517b9098868ffda79d622be2ee84e14b15 commit 1f8de6517b9098868ffda79d622be2ee84e14b15 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2026-07-04 00:36:16 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2026-07-04 00:36:51 +0000 biology/py-goatools: Fix build with python 3.12 Reported by: pkg-fallout --- biology/py-goatools/Makefile | 8 +++++--- biology/py-goatools/files/patch-versioneer.py | 14 ++++++++++++++ 2 files changed, 19 insertions(+), 3 deletions(-) diff --git a/biology/py-goatools/Makefile b/biology/py-goatools/Makefile index 1e3f9a2d95cf..bb18c6ca9aca 100644 --- a/biology/py-goatools/Makefile +++ b/biology/py-goatools/Makefile @@ -1,6 +1,6 @@ PORTNAME= goatools DISTVERSION= 1.1.6 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -14,7 +14,7 @@ LICENSE_FILE= ${WRKSRC}/LICENSE # xlrd should be == 1.2.0 RUN_DEPENDS= ${PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}numpy>=1.16:math/py-numpy@${PY_FLAVOR} \ + ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}xlsxwriter>0:textproc/py-xlsxwriter@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}statsmodels>0:math/py-statsmodels@${PY_FLAVOR} \ @@ -25,7 +25,9 @@ RUN_DEPENDS= ${PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pygraphviz>0:graphics/py-pygraphviz@${PY_FLAVOR} \ wget>0:ftp/wget -USES= python +USES= python:3.6+ USE_PYTHON= autoplist distutils +NO_ARCH= yes + .include <bsd.port.mk> diff --git a/biology/py-goatools/files/patch-versioneer.py b/biology/py-goatools/files/patch-versioneer.py new file mode 100644 index 000000000000..b9c6f93df5a5 --- /dev/null +++ b/biology/py-goatools/files/patch-versioneer.py @@ -0,0 +1,14 @@ +--- versioneer.py.orig 2021-05-29 06:24:51 UTC ++++ versioneer.py +@@ -339,9 +339,9 @@ def get_config_from_root(root): + # configparser.NoOptionError (if it lacks "VCS="). See the docstring at + # the top of versioneer.py for instructions on writing your setup.cfg . + setup_cfg = os.path.join(root, "setup.cfg") +- parser = configparser.SafeConfigParser() ++ parser = configparser.ConfigParser() + with open(setup_cfg, "r") as f: +- parser.readfp(f) ++ parser.read_file(f) + VCS = parser.get("versioneer", "VCS") # mandatory + + def get(parser, name):home | help
Want to link to this message? Use this
URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?6a4855a5.30903.3e2a2f83>