Date: Sat, 04 Jul 2026 00:42:16 +0000 From: Jason W. Bacon <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 117cd80d6d50 - main - biology/atac-seq: Update to 0.3.1 Message-ID: <6a4856e8.30caa.7c40866c@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=117cd80d6d50120ce912999f0eb8c65da0532187 commit 117cd80d6d50120ce912999f0eb8c65da0532187 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2026-07-04 00:39:42 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2026-07-04 00:39:42 +0000 biology/atac-seq: Update to 0.3.1 Drop py-macs2: Incompatible with python 3.12 and unmaintained Install py-macs2 unconditionally --- biology/atac-seq/Makefile | 5 ++--- biology/atac-seq/distinfo | 2 +- 2 files changed, 3 insertions(+), 4 deletions(-) diff --git a/biology/atac-seq/Makefile b/biology/atac-seq/Makefile index 8c9a50b7d12e..52004a530947 100644 --- a/biology/atac-seq/Makefile +++ b/biology/atac-seq/Makefile @@ -2,7 +2,7 @@ PORTNAME= atac-seq # Update major version only if the metaport is overhauled # Update minor version when adding or removing dependencies # Update revision for all other changes -DISTVERSION= 0.3.0 +DISTVERSION= 0.3.1 CATEGORIES= biology python MASTER_SITES= # empty @@ -15,13 +15,12 @@ LICENSE= BSD2CLAUSE RUN_DEPENDS= sra-tools>0:biology/sra-tools \ fastq-trim>0:biology/fastq-trim \ fastqc>0:biology/fastqc \ - ${PYTHON_PKGNAMEPREFIX}MACS3>0:biology/py-macs3@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}multiqc>0:biology/py-multiqc@${PY_FLAVOR} \ biolibc-tools>0:biology/biolibc-tools \ bwa>0:biology/bwa \ bowtie2>0:biology/bowtie2 \ samtools>0:biology/samtools \ - ${PYTHON_PKGNAMEPREFIX}macs2>0:biology/py-macs2@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}MACS3>0:biology/py-macs3@${PY_FLAVOR} \ fasda>0:biology/fasda \ fasda-utils>0:biology/fasda-utils \ peak-classifier>0:biology/peak-classifier \ diff --git a/biology/atac-seq/distinfo b/biology/atac-seq/distinfo index 7ab5dc3a527d..79cf14b6de7f 100644 --- a/biology/atac-seq/distinfo +++ b/biology/atac-seq/distinfo @@ -1 +1 @@ -TIMESTAMP = 1772714589 +TIMESTAMP = 1673549889home | help
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