Date: Sat, 27 Jun 2026 19:47:24 +0000 From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 1e8a35d23eb4 - main - science/py-nixio: New port: Python reimplementation of NIX data format Message-ID: <6a4028cc.18261.2ef23d26@gitrepo.freebsd.org>
index | next in thread | raw e-mail
The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=1e8a35d23eb4a5ce93ed14d0dfca0afcad961d01 commit 1e8a35d23eb4a5ce93ed14d0dfca0afcad961d01 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2026-06-27 18:08:03 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2026-06-27 19:47:17 +0000 science/py-nixio: New port: Python reimplementation of NIX data format --- science/Makefile | 1 + science/py-nixio/Makefile | 23 +++++++++++++++++++++++ science/py-nixio/distinfo | 3 +++ science/py-nixio/files/patch-setup.py | 13 +++++++++++++ science/py-nixio/pkg-descr | 4 ++++ 5 files changed, 44 insertions(+) diff --git a/science/Makefile b/science/Makefile index 01fecd2c2f02..ef0cd36a4c27 100644 --- a/science/Makefile +++ b/science/Makefile @@ -392,6 +392,7 @@ SUBDIR += py-netcdf-flattener SUBDIR += py-nglview SUBDIR += py-nibabel + SUBDIR += py-nixio SUBDIR += py-obspy SUBDIR += py-oddt SUBDIR += py-openEMS diff --git a/science/py-nixio/Makefile b/science/py-nixio/Makefile new file mode 100644 index 000000000000..dc0eee8146d1 --- /dev/null +++ b/science/py-nixio/Makefile @@ -0,0 +1,23 @@ +PORTNAME= nixio +DISTVERSION= 1.5.4 +CATEGORIES= science python +MASTER_SITES= PYPI +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Python reimplementation of NIX data format +WWW= https://github.com/G-Node/nixpy + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools>=0:devel/py-setuptools@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}numpy>=0,1:math/py-numpy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} + +USES= python +USE_PYTHON= autoplist concurrent pep517 + +.include <bsd.port.mk> diff --git a/science/py-nixio/distinfo b/science/py-nixio/distinfo new file mode 100644 index 000000000000..27ba4d0c3f9b --- /dev/null +++ b/science/py-nixio/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1782556532 +SHA256 (nixio-1.5.4.tar.gz) = 0aa6a44100d60acfa40430e5467d75431b10e7e4804a92735b29d6cbcf7d1863 +SIZE (nixio-1.5.4.tar.gz) = 28795377 diff --git a/science/py-nixio/files/patch-setup.py b/science/py-nixio/files/patch-setup.py new file mode 100644 index 000000000000..d78512ce68b7 --- /dev/null +++ b/science/py-nixio/files/patch-setup.py @@ -0,0 +1,13 @@ +-- Remove pytest-runner from setup_requires as it's not needed for build +-- and the port doesn't exist in FreeBSD ports tree. + +--- setup.py.orig 2026-06-27 10:37:52 UTC ++++ setup.py +@@ -77,7 +77,6 @@ setup( + python_requires=">=3.6", + tests_require=['pytest', 'scipy', 'pillow', 'matplotlib'], + test_suite='pytest', +- setup_requires=['pytest-runner'], + install_requires=['numpy', 'h5py', 'six', 'enum34;python_version<"3.4"'], + package_data={'nixio': [license_text, description_text]}, + include_package_data=True, diff --git a/science/py-nixio/pkg-descr b/science/py-nixio/pkg-descr new file mode 100644 index 000000000000..cc62ab48899d --- /dev/null +++ b/science/py-nixio/pkg-descr @@ -0,0 +1,4 @@ +NIXIO is a Python reimplementation of the NIX (Neuroscience Information +Exchange) data model and format. NIX is an open data format designed for +storing annotated scientific data in a hierarchical structure, particularly +suited for neuroscience research.home | help
Want to link to this message? Use this
URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?6a4028cc.18261.2ef23d26>