Date: Sat, 27 Jun 2026 19:47:26 +0000 From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 2c2b73cf4937 - main - science/py-hdmf: New port: Hierarchical data modeling framework for modern science data standards Message-ID: <6a4028ce.47368.7e054832@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=2c2b73cf49376fcc7d783fb8e32b333c9b80e2b5 commit 2c2b73cf49376fcc7d783fb8e32b333c9b80e2b5 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2026-06-27 18:37:51 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2026-06-27 19:47:17 +0000 science/py-hdmf: New port: Hierarchical data modeling framework for modern science data standards --- science/Makefile | 1 + science/py-hdmf/Makefile | 40 ++++++++++++++++++++++++++++++++++++++++ science/py-hdmf/distinfo | 3 +++ science/py-hdmf/pkg-descr | 4 ++++ 4 files changed, 48 insertions(+) diff --git a/science/Makefile b/science/Makefile index ef0cd36a4c27..fabb50f9596a 100644 --- a/science/Makefile +++ b/science/Makefile @@ -357,6 +357,7 @@ SUBDIR += py-h5netcdf SUBDIR += py-h5py SUBDIR += py-h5pyd + SUBDIR += py-hdmf SUBDIR += py-hiPhive SUBDIR += py-hoomd-blue SUBDIR += py-icet diff --git a/science/py-hdmf/Makefile b/science/py-hdmf/Makefile new file mode 100644 index 000000000000..817e254f1850 --- /dev/null +++ b/science/py-hdmf/Makefile @@ -0,0 +1,40 @@ +PORTNAME= hdmf +DISTVERSION= 6.1.0 +CATEGORIES= science python +MASTER_SITES= PYPI +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Hierarchical data modeling framework for modern science data standards +WWW= https://github.com/hdmf-dev/hdmf + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/license.txt + +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}hatch-vcs>=0:devel/py-hatch-vcs@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}hatchling>=0:devel/py-hatchling@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}h5py>=3.6.0:science/py-h5py@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}jsonschema>=3.2.0:devel/py-jsonschema@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}numpy>=1.22.0,1:math/py-numpy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pandas>=1.4.0:math/py-pandas@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}ruamel.yaml>=0.16:devel/py-ruamel.yaml@${PY_FLAVOR} +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pytest-cov>=0:devel/py-pytest-cov@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}python-dateutil>=0:devel/py-python-dateutil@${PY_FLAVOR} + +USES= python +USE_PYTHON= pep517 concurrent autoplist pytest + +TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} +TEST_ARGS= -o "testpaths=tests" +PYTEST_BROKEN_TESTS= build_const_args \ + create_load_namespace_yaml \ + create_test_type_map \ + get_qux_buildmanager \ + get_types \ + swap_inc_def + +NO_ARCH= yes + +# tests as of 6.1.0: 1849 passed, 96 skipped, 6 deselected, 1 xfailed in 7.44s + +.include <bsd.port.mk> diff --git a/science/py-hdmf/distinfo b/science/py-hdmf/distinfo new file mode 100644 index 000000000000..932133701a1a --- /dev/null +++ b/science/py-hdmf/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1751400000 +SHA256 (hdmf-6.1.0.tar.gz) = 545b583ee667de2b930520555e28e5cf3bfea2706bb92880277d21f05f7ad5f7 +SIZE (hdmf-6.1.0.tar.gz) = 16691354 diff --git a/science/py-hdmf/pkg-descr b/science/py-hdmf/pkg-descr new file mode 100644 index 000000000000..d06a80b5999f --- /dev/null +++ b/science/py-hdmf/pkg-descr @@ -0,0 +1,4 @@ +The Hierarchical Data Modeling Framework, or HDMF, is a Python package for +working with hierarchical data. It provides APIs for specifying data models, +reading and writing data to different storage backends, and representing +data with Python objects.home | help
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