Date: Fri, 01 May 2026 02:03:46 +0000 From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: ca5d27c127f6 - main - biology/py-pyrodigal: update 3=?utf-8?Q?=2E6.3 =E2=86=92?= 3.7.1 Message-ID: <69f40a02.3c2dc.6c464564@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=ca5d27c127f6f69bdc645231d27b52e4a32e6156 commit ca5d27c127f6f69bdc645231d27b52e4a32e6156 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2026-05-01 01:31:56 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2026-05-01 02:03:42 +0000 biology/py-pyrodigal: update 3.6.3 → 3.7.1 --- biology/py-pyrodigal/Makefile | 8 +++++--- biology/py-pyrodigal/distinfo | 6 +++--- biology/py-pyrodigal/files/patch-pyproject.toml | 12 ------------ 3 files changed, 8 insertions(+), 18 deletions(-) diff --git a/biology/py-pyrodigal/Makefile b/biology/py-pyrodigal/Makefile index abc88d6fac82..37d361e11acc 100644 --- a/biology/py-pyrodigal/Makefile +++ b/biology/py-pyrodigal/Makefile @@ -1,5 +1,5 @@ PORTNAME= pyrodigal -DISTVERSION= 3.6.3 +DISTVERSION= 3.7.1 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -26,7 +26,9 @@ xpost-build: post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pyrodigal/lib${PYTHON_TAG}.so -do-test: # as of 3.6.3 this doesn't work: https://github.com/althonos/pyrodigal/issues/63 - @cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} -m unittest discover -vv +do-test: + @cd ${TEST_WRKSRC} && ${SETENV} ${TEST_ENV} ${PYTHON_CMD} -m unittest pyrodigal.tests -vv + +# tests as of 3.7.1: Ran 99 tests in 2.562s .include <bsd.port.mk> diff --git a/biology/py-pyrodigal/distinfo b/biology/py-pyrodigal/distinfo index 19c6cf076683..fff71ed871e4 100644 --- a/biology/py-pyrodigal/distinfo +++ b/biology/py-pyrodigal/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1731398873 -SHA256 (pyrodigal-3.6.3.tar.gz) = 3e226f743c960d4d30c46ae6868aff7e2a6b98f8d837cfbd2637568569b21f78 -SIZE (pyrodigal-3.6.3.tar.gz) = 3589356 +TIMESTAMP = 1777547296 +SHA256 (pyrodigal-3.7.1.tar.gz) = 0262fc5b5fd0b16c18eb3eb9b6079e1590e6d838c3f8431c46d9027c8e67f600 +SIZE (pyrodigal-3.7.1.tar.gz) = 3676370 diff --git a/biology/py-pyrodigal/files/patch-pyproject.toml b/biology/py-pyrodigal/files/patch-pyproject.toml deleted file mode 100644 index 097ac58992f9..000000000000 --- a/biology/py-pyrodigal/files/patch-pyproject.toml +++ /dev/null @@ -1,12 +0,0 @@ -- workaround for https://github.com/althonos/pyrodigal/issues/69 - ---- pyproject.toml.orig 2025-03-03 20:52:28 UTC -+++ pyproject.toml -@@ -12,7 +12,6 @@ authors = [ - authors = [ - { name = "Martin Larralde", email = "martin.larralde@embl.de" }, - ] --platform = "any" - keywords = ["bioinformatics", "genome", "orf", "gene", "prodigal"] - classifiers = [ - "Development Status :: 5 - Production/Stable",home | help
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