Date: Mon, 30 Aug 2021 13:10:16 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 904aa6046960 - main - biology/biolibc-tools: High-performance tools based on biolibc Message-ID: <202108301310.17UDAGI3067987@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=904aa60469601239cefbb5dde7f5aa33ccac9a21 commit 904aa60469601239cefbb5dde7f5aa33ccac9a21 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2021-08-30 13:09:23 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2021-08-30 13:09:23 +0000 biology/biolibc-tools: High-performance tools based on biolibc Biolibc-tools is a collection of simple fast, memory-efficient, programs for processing biological data. These are simple programs built on biolibc that are not complex enough to warrant a separate project. --- biology/Makefile | 1 + biology/biolibc-tools/Makefile | 28 ++++++++++++++++++++++++++++ biology/biolibc-tools/distinfo | 3 +++ biology/biolibc-tools/pkg-descr | 6 ++++++ biology/biolibc-tools/pkg-plist | 7 +++++++ 5 files changed, 45 insertions(+) diff --git a/biology/Makefile b/biology/Makefile index b3a5731f8a6a..34d07d7a77a8 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -13,6 +13,7 @@ SUBDIR += bioawk SUBDIR += biococoa SUBDIR += biolibc + SUBDIR += biolibc-tools SUBDIR += bioparser SUBDIR += biosig SUBDIR += biosoup diff --git a/biology/biolibc-tools/Makefile b/biology/biolibc-tools/Makefile new file mode 100644 index 000000000000..39913d8b5347 --- /dev/null +++ b/biology/biolibc-tools/Makefile @@ -0,0 +1,28 @@ +# Created by: J. Bacon <jwb@FreeBSD.org> + +PORTNAME= biolibc-tools +DISTVERSION= 0.1.0-34 +DISTVERSIONSUFFIX= -gf1224de +CATEGORIES= biology + +MAINTAINER= jwb@FreeBSD.org +COMMENT= High-performance bioinformatics tools based on biolibc + +LICENSE= BSD2CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= uthash>0:devel/uthash +LIB_DEPENDS= libbiolibc.so:biology/biolibc \ + libxtend.so:devel/libxtend \ + libxxhash.so:devel/xxhash + +USE_GITHUB= yes + +GH_ACCOUNT= auerlab + +INSTALL_TARGET= install-strip + +pre-build: + (cd ${WRKSRC} && ${MAKE} LOCALBASE=${LOCALBASE} depend) + +.include <bsd.port.mk> diff --git a/biology/biolibc-tools/distinfo b/biology/biolibc-tools/distinfo new file mode 100644 index 000000000000..9a1bab65b7ce --- /dev/null +++ b/biology/biolibc-tools/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1630328729 +SHA256 (auerlab-biolibc-tools-0.1.0-34-gf1224de_GH0.tar.gz) = c63309cad0e73a9336deebfc9ea9104320810d45631141ec1a8554f6cf5a6cf7 +SIZE (auerlab-biolibc-tools-0.1.0-34-gf1224de_GH0.tar.gz) = 11683 diff --git a/biology/biolibc-tools/pkg-descr b/biology/biolibc-tools/pkg-descr new file mode 100644 index 000000000000..0eed7c2f7313 --- /dev/null +++ b/biology/biolibc-tools/pkg-descr @@ -0,0 +1,6 @@ +Biolibc-tools is a collection of simple fast, memory-efficient, +programs for processing biological data. These are simple programs +built on biolibc that are not complex enough to warrant a separate +project. + +WWW: https://github.com/auerlab/biolibc-tools diff --git a/biology/biolibc-tools/pkg-plist b/biology/biolibc-tools/pkg-plist new file mode 100644 index 000000000000..04756a2801be --- /dev/null +++ b/biology/biolibc-tools/pkg-plist @@ -0,0 +1,7 @@ +bin/fastq-derep.sh +bin/fastx-derep +bin/fastx2tsv +libexec/biolibc-tools/uniq-seqs.awk +man/man1/fastq-dedup.sh.1.gz +man/man1/fastx-derep.1.gz +man/man1/fastx2tsv.1.gzhome | help
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