Date: Sat, 26 Aug 2023 12:57:05 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 6a0747976346 - main - biology/ncbi-blast+: Update to 2.14.1 Message-ID: <202308261257.37QCv5nP031061@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=6a07479763460385abf17aa7e99d1c61981e37c9 commit 6a07479763460385abf17aa7e99d1c61981e37c9 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2023-08-26 12:55:21 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2023-08-26 12:57:04 +0000 biology/ncbi-blast+: Update to 2.14.1 A few minor fixes and enhancements Changes: https://www.ncbi.nlm.nih.gov/books/NBK131777/ Reported by: portscout --- biology/ncbi-blast+/Makefile | 2 +- biology/ncbi-blast+/distinfo | 6 +++--- biology/ncbi-blast+/pkg-plist | 17 +++++++++++++++-- 3 files changed, 19 insertions(+), 6 deletions(-) diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile index 9d358d05ebd9..35bcdbfb1fe2 100644 --- a/biology/ncbi-blast+/Makefile +++ b/biology/ncbi-blast+/Makefile @@ -1,5 +1,5 @@ PORTNAME= ncbi-blast+ -DISTVERSION= 2.14.0 +DISTVERSION= 2.14.1 CATEGORIES= biology perl5 python MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \ https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/ diff --git a/biology/ncbi-blast+/distinfo b/biology/ncbi-blast+/distinfo index a3b7142fbb2e..4af49f2b46ea 100644 --- a/biology/ncbi-blast+/distinfo +++ b/biology/ncbi-blast+/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1685108714 -SHA256 (ncbi-blast-2.14.0+-src.tar.gz) = bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500 -SIZE (ncbi-blast-2.14.0+-src.tar.gz) = 28200227 +TIMESTAMP = 1692973880 +SHA256 (ncbi-blast-2.14.1+-src.tar.gz) = 712c2dbdf0fb13cc1c2d4f4ef5dd1ce4b06c3b57e96dfea8f23e6e99f5b1650e +SIZE (ncbi-blast-2.14.1+-src.tar.gz) = 28258487 diff --git a/biology/ncbi-blast+/pkg-plist b/biology/ncbi-blast+/pkg-plist index a432cd175519..a48efb2375e8 100644 --- a/biology/ncbi-blast+/pkg-plist +++ b/biology/ncbi-blast+/pkg-plist @@ -295,6 +295,11 @@ include/ncbi-tools++/common/test_data_path.h include/ncbi-tools++/connect/connect_export.h include/ncbi-tools++/connect/email_diag_handler.hpp include/ncbi-tools++/connect/error_codes.hpp +include/ncbi-tools++/connect/ext/ncbi_crypt.h +include/ncbi-tools++/connect/ext/ncbi_dblb.h +include/ncbi-tools++/connect/ext/ncbi_dblb_svcmapper.hpp +include/ncbi-tools++/connect/ext/ncbi_ifconf.h +include/ncbi-tools++/connect/ext/ncbi_localnet.h include/ncbi-tools++/connect/impl/connect_misc.hpp include/ncbi-tools++/connect/impl/ncbi_uv_nghttp2.hpp include/ncbi-tools++/connect/impl/server_connection.hpp @@ -321,7 +326,6 @@ include/ncbi-tools++/connect/ncbi_http_connector.h include/ncbi-tools++/connect/ncbi_http_session.hpp include/ncbi-tools++/connect/ncbi_iprange.h include/ncbi-tools++/connect/ncbi_ipv6.h -include/ncbi-tools++/connect/ncbi_lbos.hpp include/ncbi-tools++/connect/ncbi_localip.h include/ncbi-tools++/connect/ncbi_localip.hpp include/ncbi-tools++/connect/ncbi_mbedtls.h @@ -391,6 +395,7 @@ include/ncbi-tools++/connect/services/srv_connections.hpp include/ncbi-tools++/connect/services/srv_connections_expt.hpp include/ncbi-tools++/connect/services/util.hpp include/ncbi-tools++/connect/threaded_server.hpp +include/ncbi-tools++/corelib/atomic_util.hpp include/ncbi-tools++/corelib/blob_storage.hpp include/ncbi-tools++/corelib/ddumpable.hpp include/ncbi-tools++/corelib/env_reg.hpp @@ -424,6 +429,7 @@ include/ncbi-tools++/corelib/mswin_export.h include/ncbi-tools++/corelib/mswin_no_popup.h include/ncbi-tools++/corelib/ncbi_autoinit.hpp include/ncbi-tools++/corelib/ncbi_base64.h +include/ncbi-tools++/corelib/ncbi_base_build_ver.h include/ncbi-tools++/corelib/ncbi_bswap.hpp include/ncbi-tools++/corelib/ncbi_config.hpp include/ncbi-tools++/corelib/ncbi_cookies.hpp @@ -583,6 +589,7 @@ include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/stack.h include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/strfunc.h include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/strtod.h include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/swap.h +include/ncbi-tools++/misc/jsonwrapp/rapidjson11/istreamasync.h include/ncbi-tools++/misc/jsonwrapp/rapidjson11/istreamwrapper.h include/ncbi-tools++/misc/jsonwrapp/rapidjson11/license.txt include/ncbi-tools++/misc/jsonwrapp/rapidjson11/memorybuffer.h @@ -3588,7 +3595,6 @@ include/ncbi-tools++/objtools/edit/huge_file_process.hpp include/ncbi-tools++/objtools/edit/link_cds_mrna.hpp include/ncbi-tools++/objtools/edit/loc_edit.hpp include/ncbi-tools++/objtools/edit/mail_report.hpp -include/ncbi-tools++/objtools/edit/mla_updater.hpp include/ncbi-tools++/objtools/edit/parse_text_options.hpp include/ncbi-tools++/objtools/edit/promote.hpp include/ncbi-tools++/objtools/edit/pub_fix.hpp @@ -4829,6 +4835,9 @@ include/ncbi-tools++/util/rangemap.hpp include/ncbi-tools++/util/rangemap.inl include/ncbi-tools++/util/reader_writer.hpp include/ncbi-tools++/util/regexp.hpp +include/ncbi-tools++/util/regexp/ctre/LICENSE +include/ncbi-tools++/util/regexp/ctre/ctre-unicode.hpp +include/ncbi-tools++/util/regexp/ctre/ctre.hpp include/ncbi-tools++/util/regexp/pcre.h include/ncbi-tools++/util/regexp/pcrecpp.h include/ncbi-tools++/util/regexp/pcrecpparg.h @@ -4917,6 +4926,8 @@ lib/ncbi-tools++/libcomposition_adjustment-static.a lib/ncbi-tools++/libcomposition_adjustment.a lib/ncbi-tools++/libconnect-static.a lib/ncbi-tools++/libconnect.a +lib/ncbi-tools++/libconnext-static.a +lib/ncbi-tools++/libconnext.a lib/ncbi-tools++/libconnssl-static.a lib/ncbi-tools++/libconnssl.a lib/ncbi-tools++/libdbapi-static.a @@ -5139,6 +5150,8 @@ lib/ncbi-tools++/libxcompress-static.a lib/ncbi-tools++/libxcompress.a lib/ncbi-tools++/libxconnect-static.a lib/ncbi-tools++/libxconnect.a +lib/ncbi-tools++/libxconnext-static.a +lib/ncbi-tools++/libxconnext.a lib/ncbi-tools++/libxconnserv-static.a lib/ncbi-tools++/libxconnserv.a lib/ncbi-tools++/libxcser-static.a
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