Date: Fri, 10 Apr 2026 09:41:22 +0000 From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 6cadd1db3205 - main - math/elpa: update 2021.11=?utf-8?Q?=2E001 =E2=86=92?= 2026.02.001 Message-ID: <69d8c5c2.18515.16ee9db4@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=6cadd1db32052195d0ecdfa6ae5bacb72fdd5a17 commit 6cadd1db32052195d0ecdfa6ae5bacb72fdd5a17 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2026-04-10 08:10:43 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2026-04-10 09:40:53 +0000 math/elpa: update 2021.11.001 → 2026.02.001 --- math/elpa/Makefile | 18 +- math/elpa/distinfo | 6 +- math/elpa/files/patch-configure | 256 ++++++++++++++++++++- .../elpa/files/patch-fdep_fortran__dependencies.mk | 17 ++ math/elpa/files/patch-src_elpa__api.F90 | 48 ++++ math/elpa/pkg-plist | 30 +-- science/abinit/Makefile | 1 + science/fleur/Makefile | 2 +- 8 files changed, 351 insertions(+), 27 deletions(-) diff --git a/math/elpa/Makefile b/math/elpa/Makefile index 7af0e6156556..6e4988ca4df4 100644 --- a/math/elpa/Makefile +++ b/math/elpa/Makefile @@ -1,6 +1,5 @@ PORTNAME= elpa -DISTVERSION= 2021.11.001 -PORTREVISION= 5 +DISTVERSION= 2026.02.001 CATEGORIES= math MASTER_SITES= https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/${DISTVERSION}/ @@ -30,15 +29,14 @@ CFLAGS+= -DFREEBSD_OSVERSION=${OSVERSION} FCFLAGS+= -I${WRKSRC} -I${WRKSRC}/private_modules LDFLAGS+= -lutil -# ugly workaround for missing .mod files: some targets are added before 'all' that force rebuild of missing .mod files -ALL_TARGET= src/general/libelpa_private_la-elpa_utilities.lo \ +# Build the private library first to ensure all .mod files exist before the public library is compiled +ALL_TARGET= src/helpers/libelpa_private_la-mod_precision.lo \ + src/helpers/libelpa_private_la-mod_omp.lo \ src/libelpa_private_la-elpa_generated_fortran_interfaces.lo \ - src/elpa1/libelpa_private_la-elpa1_compute_private.lo \ - src/elpa2/libelpa_private_la-elpa2_compute.lo \ all INSTALL_TARGET= install-strip -BINARY_ALIAS= make=gmake gcc=gcc${GCC_DEFAULT} g++=g++${GCC_DEFAULT} # build fails with clang: recursively calls cc +BINARY_ALIAS= make=gmake gcc=gcc${GCC_DEFAULT} g++=g++${GCC_DEFAULT} cpp=cpp${GCC_DEFAULT} # build fails with clang: recursively calls cc; cpp=GCC because fdep uses cpp for Fortran module tracking FCFLAGS+= -std=legacy -I${LOCALBASE}/include MAKE_JOBS_UNSAFE= yes # part of the workaround for .mod files @@ -60,6 +58,9 @@ post-patch: @${FIND} ${WRKSRC} -name "*.mk" | ${XARGS} ${REINPLACE_CMD} -e 's|-Werror| |' # patch in the full path name of config-f90.h @${FIND} ${WRKSRC} -name *.F90 -o -name *.c | ${XARGS} ${REINPLACE_CMD} -e 's|#include "config-f90.h"|#include "${WRKSRC}/config-f90.h"|' + # alloca.h is Linux-specific; alloca() is already provided by stdlib.h on FreeBSD + @${FIND} ${WRKSRC} \( -name "*.c" -o -name "*.cpp" -o -name "*.cu" -o -name "*.hip" \) | \ + ${XARGS} ${REINPLACE_CMD} -e 's|#include <alloca.h>||' .include <bsd.port.options.mk> @@ -70,4 +71,7 @@ CONFIGURE_ARGS+= --disable-sse --disable-sse-assembly post-install-DOCS-on: @cd ${STAGEDIR}${DOCSDIR} && ${RM} *gpl* COPYING LICENSE +post-install-DOCS-off: + @${RM} -r ${STAGEDIR}${DOCSDIR} + .include <bsd.port.mk> diff --git a/math/elpa/distinfo b/math/elpa/distinfo index 2ab100f5d7b4..f3d85a1bb106 100644 --- a/math/elpa/distinfo +++ b/math/elpa/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1642194690 -SHA256 (elpa-2021.11.001.tar.gz) = fb361da6c59946661b73e51538d419028f763d7cb9dacf9d8cd5c9cd3fb7802f -SIZE (elpa-2021.11.001.tar.gz) = 1388817 +TIMESTAMP = 1775779185 +SHA256 (elpa-2026.02.001.tar.gz) = a379f27f4dbd27b2ee45017afec656d064301e97150c874649bdfd64957b75ed +SIZE (elpa-2026.02.001.tar.gz) = 2196710 diff --git a/math/elpa/files/patch-configure b/math/elpa/files/patch-configure index d5cc1b605b19..883affd08a4c 100644 --- a/math/elpa/files/patch-configure +++ b/math/elpa/files/patch-configure @@ -1,6 +1,258 @@ ---- configure.orig 2018-08-29 19:42:22 UTC +--- configure.orig 2026-03-04 17:57:40 UTC +++ configure -@@ -23453,15 +23453,15 @@ postdeps_FC=$(echo $postdeps_FC | sed 's +@@ -30219,7 +30219,7 @@ printf %s "checking whether the $compiler linker ($LD) + hardcode_minus_L=no + hardcode_shlibpath_var=unsupported + inherit_rpath=no +- link_all_deplibs=unknown ++ link_all_deplibs=no + module_cmds= + module_expsym_cmds= + old_archive_from_new_cmds= +@@ -30514,7 +30514,7 @@ _LT_EOF + + *-mlibc) + archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' ++ archive_expsym_cmds='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' + ;; + + netbsd* | netbsdelf*-gnu) +@@ -30523,7 +30523,7 @@ _LT_EOF + wlarc= + else + archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' ++ archive_expsym_cmds='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' + fi + ;; + +@@ -30542,7 +30542,7 @@ _LT_EOF + _LT_EOF + elif $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then + archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' ++ archive_expsym_cmds='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' + else + ld_shlibs=no + fi +@@ -30571,7 +30571,7 @@ _LT_EOF + if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then + hardcode_libdir_flag_spec='$wl-rpath $wl$libdir' + archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' ++ archive_expsym_cmds='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' + else + ld_shlibs=no + fi +@@ -30589,7 +30589,7 @@ _LT_EOF + *) + if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then + archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' ++ archive_expsym_cmds='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' + else + ld_shlibs=no + fi +@@ -31253,7 +31253,7 @@ printf "%s\n" "$lt_cv_irix_exported_symbol" >&6; } + hardcode_direct_absolute=yes + if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`"; then + archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' +- archive_expsym_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags $wl-retain-symbols-file,$export_symbols' ++ archive_expsym_cmds='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags $wl-version-script,$lib-ver' + hardcode_libdir_flag_spec='$wl-rpath,$libdir' + export_dynamic_flag_spec='$wl-E' + else +@@ -32122,7 +32122,7 @@ freebsd* | dragonfly* | midnightbsd*) + version_type=freebsd-$objformat + case $version_type in + freebsd-elf*) +- library_names_spec='$libname$release$shared_ext$versuffix $libname$release$shared_ext$major $libname$shared_ext' ++ library_names_spec='$libname$release$shared_ext$versuffix $libname$release$shared_ext$major $libname$shared_ext' soname_spec='$libname$release$shared_ext$major' + soname_spec='$libname$release$shared_ext$major' + need_version=no + need_lib_prefix=no +@@ -33862,7 +33862,7 @@ else + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: no" >&5 + printf "%s\n" "no" >&6; } + else +- if $STRIP -V 2>&1 | $GREP "GNU strip" >/dev/null; then ++ if $STRIP -V 2>&1 | $GREP "strip" >/dev/null; then + old_striplib="$STRIP --strip-debug" + striplib="$STRIP --strip-unneeded" + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +@@ -33876,7 +33876,7 @@ printf "%s\n" "yes" >&6; } + { printf "%s\n" "$as_me:${as_lineno-$LINENO}: result: yes" >&5 + printf "%s\n" "yes" >&6; } + ;; +- freebsd*) ++dragonfly* | freebsd*) + if $STRIP -V 2>&1 | $GREP "elftoolchain" >/dev/null; then + old_striplib="$STRIP --strip-debug" + striplib="$STRIP --strip-unneeded" +@@ -34120,7 +34120,7 @@ module_expsym_cmds_CXX= + inherit_rpath_CXX=no + module_cmds_CXX= + module_expsym_cmds_CXX= +-link_all_deplibs_CXX=unknown ++link_all_deplibs_CXX=no + old_archive_cmds_CXX=$old_archive_cmds + reload_flag_CXX=$reload_flag + reload_cmds_CXX=$reload_cmds +@@ -34337,7 +34337,7 @@ with_gnu_ld=$lt_cv_prog_gnu_ld + # archiving commands below assume that GNU ld is being used. + if test yes = "$with_gnu_ld"; then + archive_cmds_CXX='$CC $pic_flag -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds_CXX='$CC $pic_flag -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' ++ archive_expsym_cmds_CXX='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC $pic_flag -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' + + hardcode_libdir_flag_spec_CXX='$wl-rpath $wl$libdir' + export_dynamic_flag_spec_CXX='$wl--export-dynamic' +@@ -35036,7 +35036,7 @@ fi + case `$CC -V 2>&1` in + *"Version 7."*) + archive_cmds_CXX='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds_CXX='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' ++ archive_expsym_cmds_CXX='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' + ;; + *) # Version 8.0 or newer + tmp_idyn= +@@ -35044,7 +35044,7 @@ fi + ia64*) tmp_idyn=' -i_dynamic';; + esac + archive_cmds_CXX='$CC -shared'"$tmp_idyn"' $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds_CXX='$CC -shared'"$tmp_idyn"' $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' ++ archive_expsym_cmds_CXX='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared'"$tmp_idyn"' $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' + ;; + esac + archive_cmds_need_lc_CXX=no +@@ -35076,7 +35076,7 @@ fi + ;; + *) # Version 6 and above use weak symbols + archive_cmds_CXX='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds_CXX='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' ++ archive_expsym_cmds_CXX='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' + ;; + esac + +@@ -35087,7 +35087,7 @@ fi + cxx*) + # Compaq C++ + archive_cmds_CXX='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds_CXX='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname -o $lib $wl-retain-symbols-file $wl$export_symbols' ++ archive_expsym_cmds_CXX='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-soname $wl$soname -o $lib $wl-version-script $wl$lib-ver' + + runpath_var=LD_RUN_PATH + hardcode_libdir_flag_spec_CXX='-rpath $libdir' +@@ -35121,7 +35121,7 @@ fi + # Sun C++ 5.9 + no_undefined_flag_CXX=' -zdefs' + archive_cmds_CXX='$CC -G$allow_undefined_flag -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags' +- archive_expsym_cmds_CXX='$CC -G$allow_undefined_flag -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-retain-symbols-file $wl$export_symbols' ++ archive_expsym_cmds_CXX='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -G$allow_undefined_flag -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-version-script $wl$lib-ver' + hardcode_libdir_flag_spec_CXX='-R$libdir' + whole_archive_flag_spec_CXX='$wl--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` $wl--no-whole-archive' + compiler_needs_object_CXX=yes +@@ -35193,7 +35193,7 @@ fi + archive_cmds_CXX='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -o $lib' + hardcode_libdir_flag_spec_CXX='$wl-rpath,$libdir' + if test -z "`echo __ELF__ | $CC -E - | grep __ELF__`"; then +- archive_expsym_cmds_CXX='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-retain-symbols-file,$export_symbols -o $lib' ++ archive_expsym_cmds_CXX='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags $wl-version-script,$lib-ver -o $lib' + export_dynamic_flag_spec_CXX='$wl-E' + whole_archive_flag_spec_CXX=$wlarc'--whole-archive$convenience '$wlarc'--no-whole-archive' + fi +@@ -36749,7 +36749,7 @@ freebsd* | dragonfly* | midnightbsd*) + version_type=freebsd-$objformat + case $version_type in + freebsd-elf*) +- library_names_spec='$libname$release$shared_ext$versuffix $libname$release$shared_ext$major $libname$shared_ext' ++ library_names_spec='$libname$release$shared_ext$versuffix $libname$release$shared_ext$major $libname$shared_ext' soname_spec='$libname$release$shared_ext$major' + soname_spec='$libname$release$shared_ext$major' + need_version=no + need_lib_prefix=no +@@ -37875,7 +37875,7 @@ module_expsym_cmds_FC= + inherit_rpath_FC=no + module_cmds_FC= + module_expsym_cmds_FC= +-link_all_deplibs_FC=unknown ++link_all_deplibs_FC=no + old_archive_cmds_FC=$old_archive_cmds + reload_flag_FC=$reload_flag + reload_cmds_FC=$reload_cmds +@@ -38775,7 +38775,7 @@ printf %s "checking whether the $compiler linker ($LD) + hardcode_minus_L_FC=no + hardcode_shlibpath_var_FC=unsupported + inherit_rpath_FC=no +- link_all_deplibs_FC=unknown ++ link_all_deplibs_FC=no + module_cmds_FC= + module_expsym_cmds_FC= + old_archive_from_new_cmds_FC= +@@ -39070,7 +39070,7 @@ _LT_EOF + + *-mlibc) + archive_cmds_FC='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds_FC='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' ++ archive_expsym_cmds_FC='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' + ;; + + netbsd* | netbsdelf*-gnu) +@@ -39079,7 +39079,7 @@ _LT_EOF + wlarc= + else + archive_cmds_FC='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds_FC='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' ++ archive_expsym_cmds_FC='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' + fi + ;; + +@@ -39098,7 +39098,7 @@ _LT_EOF + _LT_EOF + elif $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then + archive_cmds_FC='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds_FC='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' ++ archive_expsym_cmds_FC='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' + else + ld_shlibs_FC=no + fi +@@ -39127,7 +39127,7 @@ _LT_EOF + if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then + hardcode_libdir_flag_spec_FC='$wl-rpath $wl$libdir' + archive_cmds_FC='$CC -shared $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds_FC='$CC -shared $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' ++ archive_expsym_cmds_FC='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' + else + ld_shlibs_FC=no + fi +@@ -39145,7 +39145,7 @@ _LT_EOF + *) + if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then + archive_cmds_FC='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname -o $lib' +- archive_expsym_cmds_FC='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-retain-symbols-file $wl$export_symbols -o $lib' ++ archive_expsym_cmds_FC='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags $wl-soname $wl$soname $wl-version-script $wl$lib-ver -o $lib' + else + ld_shlibs_FC=no + fi +@@ -39757,7 +39757,7 @@ printf "%s\n" "$lt_cv_irix_exported_symbol" >&6; } + hardcode_direct_absolute_FC=yes + if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`"; then + archive_cmds_FC='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' +- archive_expsym_cmds_FC='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags $wl-retain-symbols-file,$export_symbols' ++ archive_expsym_cmds_FC='echo "{ global:" > $lib-ver~ sed -e "s|$|;|" < $export_symbols >> $lib-ver~ echo "local: *; };" >> $lib-ver~$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags $wl-version-script,$lib-ver' + hardcode_libdir_flag_spec_FC='$wl-rpath,$libdir' + export_dynamic_flag_spec_FC='$wl-E' + else +@@ -40454,7 +40454,7 @@ freebsd* | dragonfly* | midnightbsd*) + version_type=freebsd-$objformat + case $version_type in + freebsd-elf*) +- library_names_spec='$libname$release$shared_ext$versuffix $libname$release$shared_ext$major $libname$shared_ext' ++ library_names_spec='$libname$release$shared_ext$versuffix $libname$release$shared_ext$major $libname$shared_ext' soname_spec='$libname$release$shared_ext$major' + soname_spec='$libname$release$shared_ext$major' + need_version=no + need_lib_prefix=no +@@ -44161,15 +44161,15 @@ if test x"${with_mpi}" = x"yes"; then if test x"${with_mpi}" = x"yes"; then if test x"${enable_openmp}" = x"yes"; then diff --git a/math/elpa/files/patch-fdep_fortran__dependencies.mk b/math/elpa/files/patch-fdep_fortran__dependencies.mk new file mode 100644 index 000000000000..352fab503658 --- /dev/null +++ b/math/elpa/files/patch-fdep_fortran__dependencies.mk @@ -0,0 +1,17 @@ +--- fdep/fortran_dependencies.mk.orig 2026-04-10 00:39:59 UTC ++++ fdep/fortran_dependencies.mk +@@ -64,12 +64,12 @@ $(call modinfo_name,$1,$2,$3,use): $1 $(dir $1)$(am__d + define module_targets + $(eval _$(3)_use_mods += $(call modinfo_name,$1,$2,$3,use)) + $(call modinfo_name,$1,$2,$3,use): $1 $(dir $1)$(am__dirstamp) +- $(call _f90_verbose,F90 USE [$3] $$<)$(FORTRAN_CPP) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $($p_CPPFLAGS) $(CPPFLAGS) -o /dev/stdout $$< | \ ++ $(call _f90_verbose,F90 USE [$3] $$<)$(FORTRAN_CPP) $(DEFS) $(DEFAULT_INCLUDES) -I$(abs_builddir) $(INCLUDES) $($p_CPPFLAGS) $(CPPFLAGS) -o /dev/stdout $$< | \ + grep -i -o '^ *use [^ ,!:]*' | sed 's/^[[:space:]]*//;' | tr '[:upper:]' '[:lower:]' | sort -u > $$@ + + $(eval _$(3)_def_mods += $(call modinfo_name,$1,$2,$3,def)) + $(call modinfo_name,$1,$2,$3,def): $1 $(dir $1)$(am__dirstamp) +- $(call _f90_verbose,F90 MOD [$3] $$<)$(FORTRAN_CPP) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $($p_CPPFLAGS) $(CPPFLAGS) -o /dev/stdout $$< | \ ++ $(call _f90_verbose,F90 MOD [$3] $$<)$(FORTRAN_CPP) $(DEFS) $(DEFAULT_INCLUDES) -I$(abs_builddir) $(INCLUDES) $($p_CPPFLAGS) $(CPPFLAGS) -o /dev/stdout $$< | \ + grep -i -o '^ *module [^!]*' | sed 's/^[[:space:]]*//;' | tr '[:upper:]' '[:lower:]' | grep -v "\<procedure\>\|\<intrinsic\>" > $$@ || true + + endef diff --git a/math/elpa/files/patch-src_elpa__api.F90 b/math/elpa/files/patch-src_elpa__api.F90 new file mode 100644 index 000000000000..b7f5c868ed37 --- /dev/null +++ b/math/elpa/files/patch-src_elpa__api.F90 @@ -0,0 +1,48 @@ +--- src/elpa_api.F90.orig 2025-02-07 12:00:51 UTC ++++ src/elpa_api.F90 +@@ -1122,7 +1122,7 @@ module elpa_api + !c> // /src/elpa_api.F90 + !c> int elpa_init(int api_version); + function elpa_init(api_version) result(error) bind(C, name="elpa_init") +- use elpa_utilities, only : error_unit ++ use, intrinsic :: iso_fortran_env, only : error_unit + use, intrinsic :: iso_c_binding + integer(kind=c_int), intent(in), value :: api_version + integer(kind=c_int) :: error +@@ -1194,10 +1194,18 @@ module elpa_api + !c_no> #endif + + subroutine elpa_uninit(error) ++#ifdef WITH_NVIDIA_GPU_VERSION + use cuda_functions ++#endif ++#ifdef WITH_AMD_GPU_VERSION + use hip_functions ++#endif ++#ifdef WITH_OPENMP_OFFLOAD_GPU_VERSION + use openmp_offload_functions ++#endif ++#ifdef WITH_SYCL_GPU_VERSION + use sycl_functions ++#endif + !use elpa_gpu, only : gpuDeviceArray, gpublasHandleArray, my_stream + use elpa_omp + implicit none +@@ -1293,7 +1301,7 @@ module elpa_api + !> \param error integer, optional: error code, which can be queried with elpa_strerr() + !> \result string string: the string representation + function elpa_int_value_to_string(name, value, error) result(string) +- use elpa_utilities, only : error_unit ++ use, intrinsic :: iso_fortran_env, only : error_unit + implicit none + character(kind=c_char, len=*), intent(in) :: name + integer(kind=c_int), intent(in) :: value +@@ -1342,7 +1350,7 @@ module elpa_api + !> \result value integer: the integer representation of the string + function elpa_int_string_to_value(name, string, error) result(value) + use elpa_generated_fortran_interfaces +- use elpa_utilities, only : error_unit ++ use, intrinsic :: iso_fortran_env, only : error_unit + implicit none + character(kind=c_char, len=*), intent(in) :: name + character(kind=c_char, len=*), intent(in), target :: string diff --git a/math/elpa/pkg-plist b/math/elpa/pkg-plist index fbcbee06e664..88c72956b598 100644 --- a/math/elpa/pkg-plist +++ b/math/elpa/pkg-plist @@ -1,19 +1,21 @@ bin/elpa2_print_kernels -include/elpa-2021.11.001/elpa/elpa.h -include/elpa-2021.11.001/elpa/elpa_constants.h -include/elpa-2021.11.001/elpa/elpa_generated.h -include/elpa-2021.11.001/elpa/elpa_generated_c_api.h -include/elpa-2021.11.001/elpa/elpa_generic.h -include/elpa-2021.11.001/elpa/elpa_simd_constants.h -include/elpa-2021.11.001/elpa/elpa_version.h -include/elpa-2021.11.001/modules/elpa.mod -include/elpa-2021.11.001/modules/elpa_api.mod -include/elpa-2021.11.001/modules/elpa_constants.mod -include/elpa-2021.11.001/src/helpers/lapack_interfaces.h -include/elpa-2021.11.001/src/helpers/scalapack_interfaces.h +include/elpa-2026.02.001/elpa/elpa.h +include/elpa-2026.02.001/elpa/elpa_configured_options.h +include/elpa-2026.02.001/elpa/elpa_constants.h +include/elpa-2026.02.001/elpa/elpa_explicit_name.h +include/elpa-2026.02.001/elpa/elpa_generated.h +include/elpa-2026.02.001/elpa/elpa_generated_c_api.h +include/elpa-2026.02.001/elpa/elpa_generic.h +include/elpa-2026.02.001/elpa/elpa_simd_constants.h +include/elpa-2026.02.001/elpa/elpa_version.h +include/elpa-2026.02.001/modules/elpa.mod +include/elpa-2026.02.001/modules/elpa_api.mod +include/elpa-2026.02.001/modules/elpa_constants.mod +include/elpa-2026.02.001/src/helpers/lapack_interfaces.h +include/elpa-2026.02.001/src/helpers/scalapack_interfaces.h lib/libelpa.so -lib/libelpa.so.17 -lib/libelpa.so.17.0.0 +lib/libelpa.so.19 +lib/libelpa.so.19.5.1 libdata/pkgconfig/elpa.pc share/man/man1/elpa2_print_kernels.1.gz share/man/man3/elpa_allocate.3.gz diff --git a/science/abinit/Makefile b/science/abinit/Makefile index 9409e66c23d2..099a63b63abf 100644 --- a/science/abinit/Makefile +++ b/science/abinit/Makefile @@ -1,5 +1,6 @@ PORTNAME= abinit DISTVERSION= 10.6.5 +PORTREVISION= 1 CATEGORIES= science MAINTAINER= yuri@FreeBSD.org diff --git a/science/fleur/Makefile b/science/fleur/Makefile index f1979c90b1e5..f2ae9e7a1853 100644 --- a/science/fleur/Makefile +++ b/science/fleur/Makefile @@ -1,6 +1,6 @@ PORTNAME= fleur DISTVERSION= 7.2 -PORTREVISION= 5 +PORTREVISION= 6 CATEGORIES= science # chemistry MAINTAINER= yuri@FreeBSD.orghome | help
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