Date: Mon, 11 May 2026 17:58:08 +0000 From: Joseph Mingrone <jrm@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 812aca78f2ba - main - biology/iqtree: Update to 3.1.2 Message-ID: <6a0218b0.438a7.2e245958@gitrepo.freebsd.org>
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The branch main has been updated by jrm: URL: https://cgit.FreeBSD.org/ports/commit/?id=812aca78f2ba1c164913517e69c7f21530a42641 commit 812aca78f2ba1c164913517e69c7f21530a42641 Author: Joseph Mingrone <jrm@FreeBSD.org> AuthorDate: 2026-05-09 18:34:17 +0000 Commit: Joseph Mingrone <jrm@FreeBSD.org> CommitDate: 2026-05-11 17:56:35 +0000 biology/iqtree: Update to 3.1.2 Release notes: https://github.com/iqtree/iqtree3/releases/tag/v3.1.2 Sponsored by: The FreeBSD Foundation --- biology/iqtree/Makefile | 4 ++-- biology/iqtree/distinfo | 10 +++++----- .../iqtree/files/patch-terraphast_lib_clamped__uint.cpp | 17 ----------------- 3 files changed, 7 insertions(+), 24 deletions(-) diff --git a/biology/iqtree/Makefile b/biology/iqtree/Makefile index 4d095f50904a..76e54fc007b1 100644 --- a/biology/iqtree/Makefile +++ b/biology/iqtree/Makefile @@ -1,6 +1,6 @@ PORTNAME= iqtree DISTVERSIONPREFIX= v -DISTVERSION= 3.1.1 +DISTVERSION= 3.1.2 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org @@ -19,7 +19,7 @@ USES= cmake eigen:3 USE_GITHUB= yes GH_PROJECT= iqtree3 GH_TUPLE= tothuhien:lsd2:c61110f3a4fa05325b45c97b2134792ff9d55d4c:tothuhien/lsd2 \ - iqtree:cmaple:4795b124543c02439722f36cff439bd6517a825b:iqtree/cmaple + iqtree:cmaple:3d45b1ab68e2d68a2825bf17a531e22200578cd6:iqtree/cmaple PLIST_FILES= bin/iqtree PORTEXAMPLES= custom_distributions.txt example.cf example.nex example.phy \ diff --git a/biology/iqtree/distinfo b/biology/iqtree/distinfo index 8e55721fec90..83ba4b5a0016 100644 --- a/biology/iqtree/distinfo +++ b/biology/iqtree/distinfo @@ -1,7 +1,7 @@ -TIMESTAMP = 1776629777 -SHA256 (iqtree-iqtree3-v3.1.1_GH0.tar.gz) = f748572d205609040a790df44c7bfa49d8b01ae174e123e927911696befd78c5 -SIZE (iqtree-iqtree3-v3.1.1_GH0.tar.gz) = 5913805 +TIMESTAMP = 1778350394 +SHA256 (iqtree-iqtree3-v3.1.2_GH0.tar.gz) = df85370a2ac74289787226501401ac7db7f085f51c2110d4b829b3f210822160 +SIZE (iqtree-iqtree3-v3.1.2_GH0.tar.gz) = 28742940 SHA256 (tothuhien-lsd2-c61110f3a4fa05325b45c97b2134792ff9d55d4c_GH0.tar.gz) = 9bbeaa0f8f35783c1d8dec74df6c93a804dbca808fa04484f9123de4e7258b53 SIZE (tothuhien-lsd2-c61110f3a4fa05325b45c97b2134792ff9d55d4c_GH0.tar.gz) = 1529381 -SHA256 (iqtree-cmaple-4795b124543c02439722f36cff439bd6517a825b_GH0.tar.gz) = 2d3484d4d13374ab04f8fc8b729b1849c2bebe65a825ec6dc22d83840b736215 -SIZE (iqtree-cmaple-4795b124543c02439722f36cff439bd6517a825b_GH0.tar.gz) = 4861543 +SHA256 (iqtree-cmaple-3d45b1ab68e2d68a2825bf17a531e22200578cd6_GH0.tar.gz) = b8b4d6da2b8571f5a469d1d7154e15135893dc3b5b74876b1131bfdb031a29a9 +SIZE (iqtree-cmaple-3d45b1ab68e2d68a2825bf17a531e22200578cd6_GH0.tar.gz) = 5689506 diff --git a/biology/iqtree/files/patch-terraphast_lib_clamped__uint.cpp b/biology/iqtree/files/patch-terraphast_lib_clamped__uint.cpp deleted file mode 100644 index 200b2fb455a7..000000000000 --- a/biology/iqtree/files/patch-terraphast_lib_clamped__uint.cpp +++ /dev/null @@ -1,17 +0,0 @@ ---- terraphast/lib/clamped_uint.cpp.orig 2026-05-05 02:34:53 UTC -+++ terraphast/lib/clamped_uint.cpp -@@ -90,14 +90,10 @@ template class checked_uint<true>; - template class checked_uint<true>; - - // explicitly instantiate template functions --template bool operator==(checked_uint<false>, checked_uint<false>); --template bool operator!=(checked_uint<false>, checked_uint<false>); - template checked_uint<false> operator+(checked_uint<false>, checked_uint<false>); - template checked_uint<false> operator*(checked_uint<false>, checked_uint<false>); - template std::ostream& operator<<(std::ostream&, checked_uint<false>); - --template bool operator==(checked_uint<true>, checked_uint<true>); --template bool operator!=(checked_uint<true>, checked_uint<true>); - template checked_uint<true> operator+(checked_uint<true>, checked_uint<true>); - template checked_uint<true> operator*(checked_uint<true>, checked_uint<true>); - template std::ostream& operator<<(std::ostream&, checked_uint<true>);home | help
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