Date: Sat, 27 Nov 2021 13:28:25 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 5ed416aa0967 - main - biology/hisat2: Remove patch causing quality scores of "-0" Message-ID: <202111271328.1ARDSPDI043471@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=5ed416aa0967ac4cf5153f9f7cae4b9f14c56966 commit 5ed416aa0967ac4cf5153f9f7cae4b9f14c56966 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2021-11-27 13:26:45 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2021-11-27 13:26:45 +0000 biology/hisat2: Remove patch causing quality scores of "-0" --- biology/hisat2/Makefile | 1 + biology/hisat2/files/patch-util.h | 11 ----------- 2 files changed, 1 insertion(+), 11 deletions(-) diff --git a/biology/hisat2/Makefile b/biology/hisat2/Makefile index ae0ad38fbe7d..33d56578fcf8 100644 --- a/biology/hisat2/Makefile +++ b/biology/hisat2/Makefile @@ -1,6 +1,7 @@ PORTNAME= hisat2 DISTVERSIONPREFIX= v DISTVERSION= 2.2.1 +PORTREVISION= 1 CATEGORIES= biology perl5 python MAINTAINER= jwb@FreeBSD.org diff --git a/biology/hisat2/files/patch-util.h b/biology/hisat2/files/patch-util.h deleted file mode 100644 index 43c3aa88400c..000000000000 --- a/biology/hisat2/files/patch-util.h +++ /dev/null @@ -1,11 +0,0 @@ ---- util.h.orig 2021-11-26 15:40:17 UTC -+++ util.h -@@ -43,7 +43,7 @@ char* itoa10(const T& value, char* result) { - // Only apply negative sign for base 10 - if(std::numeric_limits<T>::is_signed) { - // Avoid compiler warning in cases where T is unsigned -- if (value <= 0 && value != 0) *out++ = '-'; -+ if (value <= 0) *out++ = '-'; - } - reverse( result, out ); - *out = 0; // terminator
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