Date: Sat, 7 Nov 2009 01:23:59 +0000 (UTC) From: Dmitry Marakasov <amdmi3@FreeBSD.org> To: ports-committers@FreeBSD.org, cvs-ports@FreeBSD.org, cvs-all@FreeBSD.org Subject: cvs commit: ports/biology Makefile ports/biology/velvet Makefile distinfo pkg-descr ports/biology/velvet/files patch-Makefile patch-contrib-VelvetOptimiser-VelvetOptimiser.pl patch-src-run.c Message-ID: <200911070123.nA71NxdH011463@repoman.freebsd.org>
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amdmi3 2009-11-07 01:23:59 UTC
FreeBSD ports repository
Modified files:
biology Makefile
Added files:
biology/velvet Makefile distinfo pkg-descr
biology/velvet/files patch-Makefile
patch-contrib-VelvetOptimiser-VelvetOptimiser.pl
patch-src-run.c
Log:
Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino
and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI).
Citation:
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
D.R. Zerbino and E. Birney. Genome Research 18: 821-829 (2008)
WWW: http://www.ebi.ac.uk/~zerbino/velvet/
PR: 140147
Submitted by: Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
Revision Changes Path
1.115 +1 -0 ports/biology/Makefile
1.1 +89 -0 ports/biology/velvet/Makefile (new)
1.1 +3 -0 ports/biology/velvet/distinfo (new)
1.1 +38 -0 ports/biology/velvet/files/patch-Makefile (new)
1.1 +92 -0 ports/biology/velvet/files/patch-contrib-VelvetOptimiser-VelvetOptimiser.pl (new)
1.1 +11 -0 ports/biology/velvet/files/patch-src-run.c (new)
1.1 +10 -0 ports/biology/velvet/pkg-descr (new)
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