Date: Sat, 1 Mar 2008 14:50:08 -0800 (PST) From: KAYVEN RIESE <kayve@sfsu.edu> To: freebsd-java@freebsd.org Subject: Bioinformatic app can't find JVM Message-ID: <Pine.SOC.4.64.0803011441250.14198@libra.sfsu.edu>
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This website: http://www.fruitfly.org/annot/apollo/install.html has an installation script called apolloinst.bin with instructions to install as seen in command line clip that includes BSD info and my personal "error" diagnostic showing java is there: [::clip::] kv_bsd#sh ./apolloinst.bin Preparing to install... Extracting the installation resources from the installer archive... Configuring the installer for this system's environment... No Java virtual machine could be found from your PATH environment variable. You must install a VM prior to running this program. kv_bsd#echo $PATH /sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/X11R6/bin:/root/bin kv_bsd#cp apolloinst.bin /usr/home/kayve kv_bsd# kv_bsd#uname -a FreeBSD kv_bsd 6.2-RELEASE FreeBSD 6.2-RELEASE #0: Fri Jan 12 10:40:27 UTC 2007 root@dessler.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC i386 kv_bsd# [kayve@kv_bsd ~]$ java sdf Exception in thread "main" java.lang.NoClassDefFoundError: sdf [kayve@kv_bsd ~]$ [::end clip::] I have already tried adding JAVA_HOME="/usr/local/bin/java" to the apolloinst.bin file with no results. Thank you for your help. *----------------------------------------------------------* Kayven Riese, BSCS, MS (Physiology and Biophysics) (415) 902 5513 cellular http://kayve.net Webmaster http://ChessYoga.org *----------------------------------------------------------*
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