Date: Sun, 28 Jul 2013 12:51:51 -0400 From: "John W. O'Brien" <john@saltant.com> To: bug-followup@FreeBSD.org, wen@freebsd.org Cc: freebsd-python@FreeBSD.org Subject: Re: ports/180889: [MAINTAINER] math/py-pandas: Update to 0.12.0 Message-ID: <51F54C27.6080806@saltant.com> In-Reply-To: <51F3D86D.6080808@saltant.com> References: <201307271320.r6RDK8hH047052@freefall.freebsd.org> <51F3D86D.6080808@saltant.com>
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[-- Attachment #1 --] On 7/27/13 10:25 AM, John W. O'Brien wrote: [...] > - test_pytables_native_read (pandas.io.tests.test_pytables.TestHDFStore) > > This is somewhat more concerning, but it may be a problem with the > devel/py-tables soft dependency. Yes, pandas appears to be blameless in this case as demonstrated by the tables test error include below. wen@, Would you like me to open a PR against devel/py-tables? For reference, see the pandas test error noted above in any of these build logs: https://redports.org/buildarchive/20130727114400-47308/ % python -m unittest \ tables.tests.test_basics.CheckFileTestCase.test04_openGenericHDF5File E ====================================================================== ERROR: None (tables.tests.test_basics.CheckFileTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/site-packages/tables/tests/common.py", line 259, in newmethod return oldmethod(self, *args, **kwargs) File "/usr/local/lib/python2.7/site-packages/tables/tests/test_basics.py", line 1616, in test04_openGenericHDF5File ui = fileh.getNode(columns, "pressure", classname="Array") File "/usr/local/lib/python2.7/site-packages/tables/file.py", line 1112, in getNode node = self._getNode(nodePath) File "/usr/local/lib/python2.7/site-packages/tables/file.py", line 1057, in _getNode node = self.root._g_loadChild(nodePath) File "/usr/local/lib/python2.7/site-packages/tables/group.py", line 1131, in _g_loadChild childClass = self._g_getChildLeafClass(childName, warn=True) File "/usr/local/lib/python2.7/site-packages/tables/group.py", line 291, in _g_getChildLeafClass childCID = self._g_getLChildAttr(childName, 'CLASS') File "hdf5Extension.pyx", line 708, in tables.hdf5Extension.Group._g_getLChildAttr (tables/hdf5Extension.c:6793) HDF5ExtError: HDF5 error back trace File "H5D.c", line 345, in H5Dopen2 can't open dataset File "H5Dint.c", line 1132, in H5D_open not found File "H5Dint.c", line 1222, in H5D_open_oid unable to load type info from dataset header File "H5Omessage.c", line 484, in H5O_msg_read unable to read object header message File "H5Omessage.c", line 545, in H5O_msg_read_oh unable to decode message File "./H5Oshared.h", line 85, in H5O_dtype_shared_decode unable to decode native message File "H5Odtype.c", line 1105, in H5O_dtype_decode can't decode type File "H5Odtype.c", line 550, in H5O_dtype_decode_helper incorrect array datatype version End of HDF5 error back trace Non-existing node ``/columns/pressure`` under ``/`` ---------------------------------------------------------------------- Ran 1 test in 0.006s FAILED (errors=1) Closing remaining open files: /usr/local/lib/python2.7/site-packages/tables/tests/ex-noattr.h5... done [-- Attachment #2 --] -----BEGIN PGP SIGNATURE----- Version: GnuPG/MacGPG2 v2.0.19 (Darwin) Comment: GPGTools - http://gpgtools.org Comment: Using GnuPG with Thunderbird - http://www.enigmail.net/ iQEcBAEBCgAGBQJR9UwrAAoJEBRzAKlhyP/F2YcH/0lMmqvtWjcCwuZ4CVEcpfrH P6igVsM+aE3ReT6QTOuH44BdOsDBdkIR7yrXx+deBTF9o98BW61fi8L2GKBkb2rR uF8knmvmB/DSeOk9iF2CiWqmab6g/O2kYbGkq4PJgt/+BqgG/nQZ0/VK36SRH+7L ZewE7Vbu7tshXakl0GkmBUksf8Tu0L3/eHn/F67Bob1cDxS2jVkWT+VDp5m21UV3 E/ket6INqhZ8mU8j0MojcIyWYVgxaoNUy9fzl/tZPFFW4juyvzStEPp8smXsO+A/ LjYJDk29EIShJUD2EUp8sGT4SeLvm2tzCZR8KtVKxnsZDH1TkpRcGpU5uZFIDkg= =G+vd -----END PGP SIGNATURE-----help
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