Date: Mon, 27 Apr 2026 15:39:29 +0000 From: Jason W. Bacon <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 6a27a4d51a75 - main - biology/py-deeptools: Update to 3.5.6 Message-ID: <69ef8331.3feb4.472a8ebf@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=6a27a4d51a75654d87b9d9336c841883738ca825 commit 6a27a4d51a75654d87b9d9336c841883738ca825 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2026-04-27 15:35:51 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2026-04-27 15:35:51 +0000 biology/py-deeptools: Update to 3.5.6 Numerous fixes and enhancements since 3.5.2 Changes: https://github.com/deeptools/deepTools/releases --- biology/py-deeptools/Makefile | 18 +++++++++++------- biology/py-deeptools/distinfo | 6 +++--- 2 files changed, 14 insertions(+), 10 deletions(-) diff --git a/biology/py-deeptools/Makefile b/biology/py-deeptools/Makefile index e83d82db1e00..64cda435743f 100644 --- a/biology/py-deeptools/Makefile +++ b/biology/py-deeptools/Makefile @@ -1,9 +1,9 @@ PORTNAME= deepTools -DISTVERSION= 3.5.2 -PORTREVISION= 3 +DISTVERSION= 3.5.6 CATEGORIES= biology python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} +DISTNAME= deeptools-${DISTVERSION} MAINTAINER= jwb@FreeBSD.org COMMENT= User-friendly tools for exploring deep-sequencing data @@ -12,17 +12,21 @@ WWW= https://github.com/deeptools/deepTools LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \ +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools>0:devel/py-setuptools@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} +RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}scipy>=0.17.0:science/py-scipy@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.3.0:math/py-matplotlib@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>=3.5.0:math/py-matplotlib@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pysam>=0.14.0:biology/py-pysam@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}py2bit>=0.3.0:biology/py-py2bit@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}py2bit>=0.2.0:biology/py-py2bit@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numpydoc>=0.5:textproc/py-numpydoc@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pyBigWig>=0.3.18:biology/py-pybigwig@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pyBigWig>=0.2.1:biology/py-pybigwig@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}plotly>=4.9:graphics/py-plotly@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}deeptoolsintervals>=0.1.8:biology/py-deeptoolsintervals@${PY_FLAVOR} USES= python -USE_PYTHON= autoplist concurrent distutils +USE_PYTHON= autoplist concurrent pep517 + +NO_ARCH= yes .include <bsd.port.mk> diff --git a/biology/py-deeptools/distinfo b/biology/py-deeptools/distinfo index d9f91ee6f45e..7bfa323c9994 100644 --- a/biology/py-deeptools/distinfo +++ b/biology/py-deeptools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1687035894 -SHA256 (deepTools-3.5.2.tar.gz) = 9367f9037b1822b7d69d5abaf47ca25bf0e5dc4cb8be85bd55b6f63c90781941 -SIZE (deepTools-3.5.2.tar.gz) = 203152 +TIMESTAMP = 1777290929 +SHA256 (deeptools-3.5.6.tar.gz) = 2daf06abc8cf2df42f7e0ecacb3784ee95de1db4dd887f69f22a29f27e202369 +SIZE (deeptools-3.5.6.tar.gz) = 199316home | help
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