Date: Thu, 30 Apr 2026 15:06:14 +0300 From: Max Brazhnikov <makc@freebsd.org> To: ports-committers@freebsd.org, dev-commits-ports-all@freebsd.org, dev-commits-ports-main@freebsd.org, ports-committers@freebsd.org Cc: Yuri Victorovich <yuri@freebsd.org> Subject: Re: git: 90ca5afa56b2 - main - science/py-MDAnalysis: update 2.7.0 =?UTF-8?B?4oaS?= 2.10.0 Message-ID: <0Sh19eIjRGG6iN2WUFAF9g@freebsd.org> In-Reply-To: <69f29112.201ff.13e8d79f@gitrepo.freebsd.org>
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Hi Yuri,
> -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy1>=1.16:math/py-numpy1@${PY_FLAVOR} \
> +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}GridDataFormats>=0.4.0:math/py-GridDataFormats@${PY_FLAVOR} \
> + ${PYTHON_PKGNAMEPREFIX}biopython>=1.80:biology/py-biopython@${PY_FLAVOR} \
> + ${PYTHON_PKGNAMEPREFIX}gsd>3.0.0:science/py-gsd@${PY_FLAVOR} \
> + ${PYTHON_PKGNAMEPREFIX}joblib>=0.12:devel/py-joblib@${PY_FLAVOR} \
> + ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.5.1:math/py-matplotlib@${PY_FLAVOR} \
> clustalw2:biology/clustalw \
> rdkit>0:science/rdkit \
> - ${PYTHON_PKGNAMEPREFIX}biopython>=1.71:biology/py-biopython@${PY_FLAVOR} \
> - ${PYTHON_PKGNAMEPREFIX}GridDataFormats>=0.4.0:math/py-GridDataFormats@${PY_FLAVOR} \
> - ${PYTHON_PKGNAMEPREFIX}fasteners>0:devel/py-fasteners@${PY_FLAVOR} \
> - ${PYTHON_PKGNAMEPREFIX}gsd>=1.9.3:science/py-gsd@${PY_FLAVOR} \
> - ${PYTHON_PKGNAMEPREFIX}joblib>0:devel/py-joblib@${PY_FLAVOR} \
> - ${PYTHON_PKGNAMEPREFIX}matplotlib>=1.5.1:math/py-matplotlib@${PY_FLAVOR} \
> ${PYTHON_PKGNAMEPREFIX}mmtf-python>=1.0.0:science/py-mmtf-python@${PY_FLAVOR} \
> ${PYTHON_PKGNAMEPREFIX}networkx>=2.0:math/py-networkx@${PY_FLAVOR} \
> + ${PYTHON_PKGNAMEPREFIX}numpy>=1.26.0:math/py-numpy@${PY_FLAVOR} \
> ${PYTHON_PKGNAMEPREFIX}scipy>=1.5.0:science/py-scipy@${PY_FLAVOR} \
science/py-scipy still depends on math/py-numpy1, so this update breaks the port.
btw, I'd appreciate your feedback for https://bugs.freebsd.org/294328
Max
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